Jatropha Genome Database

JcCA0299751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0299751.20 + phase: 0 /partial
         (244 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028311001 assembled CDS                                       248   2e-66
GSVIVT01005618001 assembled CDS                                       167   4e-42
GSVIVT01024746001 assembled CDS                                        94   5e-20

>GSVIVT01028311001 assembled CDS
          Length = 269

 Score =  248 bits (632), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 148/179 (82%)

Query: 14  SELFGNLGGLLRICLFRILSMGPIPSHFAFIMDGNRRYAKKGNLKLGAGHRAGFESLISI 73
           S++F NLG  LR C+F +LS+GPIP+H AFIMDGNRR+AKK NL  GAGH+ G+ +L+S+
Sbjct: 10  SQIFENLGTFLRKCIFSVLSVGPIPNHIAFIMDGNRRFAKKQNLIEGAGHKVGYLALMSM 69

Query: 74  LKYCYELGVKYVTIYAFSIDNFKRRPDEVKDLMDLMLEKIDELLKEESMAKQYGIRVYFI 133
           L+Y YELGVKYVTIYAFSI+NFKRRP+EV+ +MDLM EKI++L+ EES+   +G+RV+FI
Sbjct: 70  LRYSYELGVKYVTIYAFSIENFKRRPEEVQSVMDLMQEKIEQLINEESILNHFGVRVHFI 129

Query: 134 GNLKLLSENVRIAAEKVMRATANNTKCTLLICLAYTSRDEILHAVQDSCKNKWEEIQPL 192
           GNLKLLS  VR+AAE+ M  TA N+K  L IC+AYTS +EI+HAV++SC  KW+EI+ L
Sbjct: 130 GNLKLLSAPVRLAAERAMLVTACNSKAVLSICVAYTSTNEIMHAVEESCVKKWDEIREL 188


>GSVIVT01005618001 assembled CDS
          Length = 242

 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 119/198 (60%), Gaps = 40/198 (20%)

Query: 31  ILSMGPIPSHFAFIMDGNRRYAKKGNLKLGAGHRAGFESLISILKYCYELGVKYVTIYAF 90
           + S+  IP+H AFIMDGNRRYAKK  L+ GAG++AGF +L+S++KYCY+LGVKY+ IYAF
Sbjct: 22  VFSVSHIPNHIAFIMDGNRRYAKKWKLEEGAGYKAGFLALLSMIKYCYKLGVKYIAIYAF 81

Query: 91  SIDNFKRRPDEVKDLMDLMLEKIDELLKEESMAKQYGIRVYFIGNLKLLSENVRIAAEKV 150
           SIDNF+RRP EV+ +MDLM EKI  LLKE+S+  Q+                        
Sbjct: 82  SIDNFRRRPQEVQYVMDLMHEKIQGLLKEQSIVNQH------------------------ 117

Query: 151 MRATANNTKCTLLICLAYTSRDEILHAVQDSCKNKWEEIQPLSFWKATN-GGIQEIDDCK 209
                        +C+ YTS DEI+H+VQ+SCK+KW E Q L+  K  N GG  EI D  
Sbjct: 118 -------------VCVVYTSSDEIVHSVQESCKDKWGETQVLNPSKGCNVGGDDEIQDYS 164

Query: 210 --KMNGVTPHGFQEFQKD 225
             K+  +  H +  F  D
Sbjct: 165 IIKLVDLEKHMYMRFAPD 182


>GSVIVT01024746001 assembled CDS
          Length = 233

 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 9/149 (6%)

Query: 37  IPSHFAFIMDGNRRYAKKGNLKLGAGHRAGFESLISILKYCYELGVKYVTIYAFSIDNFK 96
           +P H A IMDGN R+A+K  L   +GH+AG  SL  ++  C + G+K ++++AFS DN+ 
Sbjct: 1   MPEHVAVIMDGNVRWAQKRGLPAASGHQAGVRSLRELVGLCCKWGIKVLSVFAFSYDNWS 60

Query: 97  RRPDEVKDLMDLMLEKIDELLKEE-SMAKQYGIRVYFIGNLKLLSENVRIAAEKVMRATA 155
           R   EV  LM L    I+ ++K E     + GIRV  IG+L  L E ++     V   T 
Sbjct: 61  RSEGEVGFLMSL----IERVVKAELPNFGREGIRVSVIGDLSKLPEQLQKLIIDVEETTK 116

Query: 156 NNTKCTLLICLAYTSRDEILHAVQDSCKN 184
            N++   ++ L+Y+ + +IL A    CKN
Sbjct: 117 ENSRLQFIVALSYSGQCDILQA----CKN 141