Jatropha Genome Database

JcCA0299231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0299231.10 - phase: 0 /partial
         (565 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011020001 assembled CDS                                       890   0.0  

>GSVIVT01011020001 assembled CDS
          Length = 1144

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/552 (79%), Positives = 497/552 (90%), Gaps = 2/552 (0%)

Query: 1    DWKCIISILLDENPQVELTDDDATNLVRLLFASVRKAVGERIVPASDNRKQYYNKAQKEI 60
            DWKCIIS+LLDENP +ELTD+DATNL+RLL ASV+KAVGERIVPA+DNRKQYYNKAQKEI
Sbjct: 485  DWKCIISMLLDENPLIELTDEDATNLIRLLCASVKKAVGERIVPATDNRKQYYNKAQKEI 544

Query: 61   FENNRRDITIAMMKNFPLLLRKFTADKAKVPSLVEIIVHMNLELYSLKRQEQNFKNVLQL 120
            FE+NRRDIT+AMMKN+  LLRKF ADKAKVPSL+EII+HMNLELYSLKRQEQNFK +LQL
Sbjct: 545  FEHNRRDITVAMMKNYSQLLRKFMADKAKVPSLIEIILHMNLELYSLKRQEQNFKTLLQL 604

Query: 121  IKEAFFKHGEKEALRSCVKAITFCSTESQGELKDFACNKLKNLEDELIAKLKSALKEAAD 180
            ++EAFFKHGEK+ALRSCVKAI FCS+E QGELKDFA NKLK LEDELIAKLK+A+KE AD
Sbjct: 605  MREAFFKHGEKDALRSCVKAINFCSSECQGELKDFAQNKLKELEDELIAKLKTAIKEVAD 664

Query: 181  GD-EYSLLVNLKRLYELQLSRAVPIESLYDDIVRILHYFRNVDDEVVSFLLLNMYLHVAW 239
            GD EYSLLVNLKRLYELQLSR+VPIESLY+D+V IL   +++DDEVVSFLL NM LHVAW
Sbjct: 665  GDDEYSLLVNLKRLYELQLSRSVPIESLYEDMVMILKSSKSMDDEVVSFLLHNMSLHVAW 724

Query: 240  SLQSIVNSETVSEAQLSSLLSKRNVLFEELEYFLITPSNEERVSKYANQLACRVCIILAE 299
             L +I+NS+TVSE  LSSLLSKR  LFE+LE+FL   +  +   K ANQ ACRVCIILA+
Sbjct: 725  CLHAIINSDTVSEESLSSLLSKRTTLFEQLEHFLYAHTEVQEEGKRANQPACRVCIILAQ 784

Query: 300  AWCLFRQTNFSSTKLESLGYCPDTSVLQKFWRLSEQQLNISDETEDEDSNKEYIEETNRD 359
             WCLF++T FSSTKLESLGYCPD+SVLQKFW+L EQQLNISDETE++D N+EY+EETNRD
Sbjct: 785  VWCLFKKTKFSSTKLESLGYCPDSSVLQKFWKLCEQQLNISDETEEDDVNQEYVEETNRD 844

Query: 360  AVVIAAAKLVASGTVSKEYLAPEIISHFVMHGTSIAEIVKHLITVIKKKDDDTTNIFLEA 419
            AV+IAAA LVA+  V KEYL PEIISHFVMHGTSIAEIVK+LI V+KKKDDD  NIFLEA
Sbjct: 845  AVMIAAAMLVATDVVPKEYLGPEIISHFVMHGTSIAEIVKNLIAVLKKKDDDVPNIFLEA 904

Query: 420  LKRAHHRHLEELSRSDDGSVG-KSFQECKDLAARLSATFMGAARNKHRADILKIVKEGIE 478
            L+RA+HRHL ELSRSDD S+  KS ++CKDLAARLS TFMGAARNKHR DIL+IVK+GI+
Sbjct: 905  LRRAYHRHLVELSRSDDTSLASKSVKDCKDLAARLSTTFMGAARNKHRLDILRIVKDGID 964

Query: 479  YAFIDSPKQLSFLEGAVLHFVSKLPTSDVLEILKDVQSRTENVNTDEDPSGWRPYHTFVD 538
            YAF+D+PKQLSFLE AVLHFVS+LPTSDVLEILKDVQ RTENVNTDEDPSGWRPY+TF+D
Sbjct: 965  YAFVDAPKQLSFLEIAVLHFVSRLPTSDVLEILKDVQKRTENVNTDEDPSGWRPYYTFID 1024

Query: 539  NLREKYAKNDGF 550
            +LREKY+KNDGF
Sbjct: 1025 SLREKYSKNDGF 1036