Jatropha Genome Database

JcCA0299021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0299021.10 + phase: 0 
         (337 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033851001 assembled CDS                                       369   e-103
GSVIVT01036436001 assembled CDS                                       125   2e-29

>GSVIVT01033851001 assembled CDS
          Length = 333

 Score =  369 bits (948), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/243 (74%), Positives = 202/243 (83%), Gaps = 9/243 (3%)

Query: 69  AIKSGQFLNILGAAPALFFRLGTGVFVNGYSASFVSKNEIPPGQYALEVAGYKVKESSKV 128
           +I+  +  +ILGA+ AL  RLGTGVFV+GYSASFVS++EIPP +Y LE+AG+KVKE+SKV
Sbjct: 69  SIRPDKVFDILGASLALILRLGTGVFVSGYSASFVSESEIPPDEYILEIAGFKVKETSKV 128

Query: 129 GPRPEKPIEIYEFESFLLMFASNCKYV-QVREIVSVLDIDVLFYPCPKNGPTFRPKVVQM 187
           GPRPEKPIEIYEFES        C +  +VREIV+VLD+DVLFYPCP+NGP FRPKV QM
Sbjct: 129 GPRPEKPIEIYEFES--------CPFCRKVREIVAVLDLDVLFYPCPRNGPNFRPKVAQM 180

Query: 188 GGKQQFPYMVDPNTGTAMYESDDIIKYLVEKYGDGTVPFMXXXXXXXXXXEGFAMIGRMG 247
           GGKQQFPYMVDPNTG AMYESDDIIKYLV KYGDG VPFM          EGFAMIGRMG
Sbjct: 181 GGKQQFPYMVDPNTGVAMYESDDIIKYLVGKYGDGNVPFMLSLGLLTTLTEGFAMIGRMG 240

Query: 248 KGSSYTPSKLPPKPLEIWSYEGSPFCKIVREALVESELPHIQRSCARGSPKRQALYEKAG 307
           KGSSYTPSKLPPKPLE+W+YE SPFCK+VRE +VE ELPHI RSCARGSPKRQ LY+KA 
Sbjct: 241 KGSSYTPSKLPPKPLELWAYEASPFCKVVREVIVELELPHILRSCARGSPKRQLLYQKAR 300

Query: 308 HFQ 310
           HFQ
Sbjct: 301 HFQ 303



 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 132 PEKPIEIYEFESFLLMFASNCKYVQVREIVSVLDIDVLFYPCPKNGPTFRPKVVQMGGKQ 191
           P KP+E++ +E+     +  CK V  RE++  L++  +   C +  P  R  + Q     
Sbjct: 251 PPKPLELWAYEA-----SPFCKVV--REVIVELELPHILRSCARGSPK-RQLLYQKARHF 302

Query: 192 QFPYMVDPNTGTAMYESDDIIKYLVEKYG 220
           Q PY+ DPNTG  M+ES +I++YL   Y 
Sbjct: 303 QAPYLEDPNTGVKMFESAEIVEYLKATYA 331


>GSVIVT01036436001 assembled CDS
          Length = 353

 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 17/194 (8%)

Query: 123 KESSKVGPRPEKPIEIYEFESFLLMFASNCKYVQ-VREIVSVLDIDVLFYPCPKNGPTFR 181
           +E++ V P P + ++++EFE+        C + + VRE ++ LD+ V  YPCPK     R
Sbjct: 141 EEATTVDP-PTR-LQLFEFEA--------CPFCRRVREAITELDLSVEVYPCPKGSVRHR 190

Query: 182 PKVVQMGGKQQFPYMVDPNTGTAMYESDDIIKYLVEKYGDGTVPFMXXXXXXXXXXEGFA 241
             V + GGK+QFP+++DPNTG +MYES +I+KYL ++YG G  P             G+ 
Sbjct: 191 EMVRRFGGKEQFPFLIDPNTGISMYESGEIVKYLFQQYGKGKSP--STGLLESTLFTGWM 248

Query: 242 -MIGRMGKGSS-YTPSKL--PPKPLEIWSYEGSPFCKIVREALVESELPHIQRSCARGSP 297
             I R G+G + +  ++L  P K LE++SYE + + +IVREAL E ELP+I ++   GSP
Sbjct: 249 PTILRAGRGMTLWEKARLDPPAKKLELFSYENNLYARIVREALCELELPYILQNVGEGSP 308

Query: 298 KRQALYEKAGHFQV 311
           + + L E +G  +V
Sbjct: 309 RTKLLIEASGSKEV 322