Jatropha Genome Database

JcCA0298491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0298491.10 + phase: 0 /TE/partial
         (575 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023989001 assembled CDS                                       287   9e-78
GSVIVT01014078001 assembled CDS                                       273   2e-73
GSVIVT01038019001 assembled CDS                                       216   3e-56
GSVIVT01023955001 assembled CDS                                        54   2e-07

>GSVIVT01023989001 assembled CDS
          Length = 814

 Score =  287 bits (735), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 183/595 (30%), Positives = 288/595 (48%), Gaps = 52/595 (8%)

Query: 7   GQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCASEGCPWRI--RAVKLPN--- 61
           G  FP+   FR+A+   +IA  F     ++        C    CPW++  RA+   N   
Sbjct: 239 GHTFPNAAKFRDAVYLMSIAGRFRYCFKRNSTKHMTVVCTVNECPWKVTARAIGESNIIQ 298

Query: 62  VPTFTIR---SLEGTHTCGRNAQNGHHQASVDWIVSFIEERLRNNINYKPKDILHDIHKQ 118
           V TF  R   SLE    C    ++  ++AS+      I++ +R+  +Y+P+ I  D  +Q
Sbjct: 299 VHTFQNRHNHSLEDVAACQPLVRS--NRASL-----LIDDVIRSTPDYQPRQICKDFQRQ 351

Query: 119 YGITIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQ 178
           +G+ + Y QAW  KE+    IYG  +  Y LLP  CE++  TNPGSI E+    +D  F+
Sbjct: 352 HGMQLTYLQAWNIKEKANERIYGEPKNYYKLLPWMCEKMVATNPGSIVEL-RHSSDGHFE 410

Query: 179 RLFVSFYASIYGFLNGCVPIIALGGIQLKSKYLGTLLVATSFDADGGLFPVAFGVVDLEN 238
           +LFV+   SI GF  GC PIIA+    +   Y G L  AT++DA+  +FP+AFGV+ LEN
Sbjct: 411 QLFVAHSISIQGFAMGCRPIIAIDSAHMSGPYRGALFSATAYDANDSMFPLAFGVMSLEN 470

Query: 239 DESWMWFLSELQNALDMNTDNMPQFTFLSDGPKGIIDAVRRKFPSSSHAFCMRHLSDSI- 297
            + W WFL  L+  +        +   +SD    ++ +V   F   +HA+C RHL ++  
Sbjct: 471 YDDWSWFLQNLKKVV-----GDKEVVIISDRRPALLRSVPEVFGLENHAYCYRHLKENFS 525

Query: 298 ---------GKEFKNSRLVHLLWKAACATTTIGFKEKMVEISEVSSAAAKWLQQFPPSQW 348
                    G + K + L  LL   A A     +   M E+ + +   A W+++  P  W
Sbjct: 526 SFLSKHNTKGNKGKENAL-QLLDSIAYARLEHDYNVSMFELRKYNDTLATWVEENAPEHW 584

Query: 349 ALVYFEGTRYGHLSSNI-EEFNRWILEARELPIIQVIERIHSKLIAEFEDRRLKSNSWFS 407
           A+  F   R+  +++N+ E FN W+   R   I   +    +KL +     + +SN+W  
Sbjct: 585 AMSKFPKQRWDKMTTNLAESFNAWLRNERHHSIYNFLMEHMAKLGSMLVKHKEESNNWKG 644

Query: 408 VLAPSAEKRMIEAINRASTYQVLRSDEVEFEVISAERSNIVNIGTHSCSCRDWQLHGIPC 467
            + P  E ++ + I +   Y V       F V        V+I   +C+CR W++ GIPC
Sbjct: 645 CIGPKIEDKVQQKIAKGEVYPVTPLMNGTFGVSIGSTFLNVDIMKRTCTCRGWEMLGIPC 704

Query: 468 SHAVAAIISCRKDVYAFAEKCFTVSSYREAYAEVICPIPEKIGWTKMGDTPMDDDDAQI- 526
            HA A I+S  ++V  F +  +        Y+     I       +  D P+ D+D  + 
Sbjct: 705 EHAAAVILSIGQNVVDFVQDWYKFPMQELIYSGSFSGI-------ETHDMPIVDNDGLVR 757

Query: 527 ---------VLPPKFRRPPGRPEKKRICIEDLNREKHTVHCSRCNQTGHYKTTCK 572
                    + PP  + PPGRP KKR  +E   ++K TV+CSRC+ +GH + TCK
Sbjct: 758 SIIGEVFFSLNPPHTKCPPGRPRKKR--LESQFQDKRTVYCSRCHTSGHNRKTCK 810


>GSVIVT01014078001 assembled CDS
          Length = 766

 Score =  273 bits (698), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 171/587 (29%), Positives = 294/587 (50%), Gaps = 34/587 (5%)

Query: 7   GQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCASEGCPWRIRAVKLPNVPTFT 66
           GQ F   + F++A+++ ++  +FE  +  +      A+C  +GCPW++ AV   N     
Sbjct: 188 GQLFDSPEEFQSAVEKHSLENNFEYTVKDNSYEYMSARCKVDGCPWKVTAVCEGNTRLVM 247

Query: 67  IRSLEGTHTCGRNAQNGHHQA-SVDWIVSFIEERLRNNINYKPKDILHDIHKQ---YGIT 122
           ++     H      Q G     S + +   I E+   +    P  +   IHK    + + 
Sbjct: 248 VKRFINIHKHSVQDQMGCKLGLSSNLVSGLIVEKPSAD----PCSLSKRIHKDQSDFDVE 303

Query: 123 IPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFV 182
             Y++ WRA+++   AI G  E+ Y L+P  C+++  + PG++A+ +T   +N+F++LFV
Sbjct: 304 ANYQKLWRARKKAKEAINGKPEDSYKLIPWMCKRLMESIPGTVAK-WTCSDENKFRQLFV 362

Query: 183 SFYASIYGFLNGCVPIIALGGIQLKSKYLGTLLVATSFDADGGLFPVAFGVVDLENDESW 242
           ++  SI GF NGC  ++ +    L   Y  TLL A++ DAD GL+P+A+GVV+ +NDE+W
Sbjct: 363 AYGCSITGFHNGCRELLFVDAYHLSGPYKDTLLSASALDADDGLYPLAYGVVNTDNDENW 422

Query: 243 MWFLSELQNALDMNTDNMPQFTFLSDGPKGIIDAVRRKFPSSSHAFCMRHLSDSI----- 297
           +WFL  L++ + M+         +SD     + A  + F S  +A C+ HL +S+     
Sbjct: 423 LWFLEHLKSIM-MDR----HVVLVSDRNPSFLSAANKVFGSDYNAHCLSHLKESLDYFIS 477

Query: 298 -------GKEFKNSRLVHLLWKAACATTTIGFKEKMVEISEVSSAAAKWLQQFPPSQWAL 350
                  G + K   L  LL   A A TT  ++  + ++  +      W+    P  WA 
Sbjct: 478 SNPVLKMGTDKKKIAL-KLLNDIAYARTTDKYEAMLGKMRLLKEELYDWVVSTGPEHWAN 536

Query: 351 VYFEGTRYGHL-SSNIEEFNRWILEARELPIIQVIERIHSKLIAEFEDRRLKSNSWFSVL 409
             F G R+  + +S +E FNR++ E R+LP++  I     KL      ++ +   W + +
Sbjct: 537 SLFPGRRWDKIFTSQVESFNRFVQEERDLPVVGFITAHRLKLSELLLRKQSEVAKWETPV 596

Query: 410 APSAEKRMIEAINRASTYQVLRSDEVEFEVISAERSNIVNIGTHSCSCRDWQLHGIPCSH 469
               E ++ E  N A             EV     +  V +   SCSCR+W++ GIPC H
Sbjct: 597 GGKIEMKIKENQNLAVGLNHHTISPTNMEVHENGETFAVALDMKSCSCREWEMTGIPCRH 656

Query: 470 AVAAIISCRKDVYAFAEKCFTVSSYREAYAEVI--CPIPEKIGWTKM-GDTPMDDDDAQI 526
           A  A+ +   ++Y + EKC+   +  + YA  +   PI +    +++ G+ P     +  
Sbjct: 657 ACCAVTAANTNIYDYVEKCYMKETQEQIYASNMPSVPIHDMPTLSELHGNDPNSLVGSMS 716

Query: 527 VL-PPKFRRPPGRPEKKRICIEDLNREKHTVHCSRCNQTGHYKTTCK 572
           +L PP  +RPPGRP KK+  I+   ++K  +HCSRC++ GH ++TCK
Sbjct: 717 ILHPPPDKRPPGRPRKKQ--IDSQLQDKRKLHCSRCHKAGHNRSTCK 761


>GSVIVT01038019001 assembled CDS
          Length = 634

 Score =  216 bits (549), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 214/441 (48%), Gaps = 15/441 (3%)

Query: 7   GQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCASEGCPWRIRAVKLPNVPTFT 66
           GQ F +   FRNA+   ++A  F  +  ++ L +  A C + GCPW+I A  +       
Sbjct: 171 GQIFTNADEFRNALYLTSLAGRFNYKFKRNSLKQMTACCTAGGCPWKITARGVGATKIVR 230

Query: 67  IRSLEGTHTCGRNAQNGHHQA-SVDWIVSFIEERLRNNINYKPKDILHDIHKQYGITIPY 125
           + + E  H      ++    A   +     I++ +R N +Y P+ I  D  +Q+G+ + Y
Sbjct: 231 VHTFENKHNHSAQEESSSVPALRPNKAALVIDDMIRANPDYLPRQICEDFERQHGVKLTY 290

Query: 126 KQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSIAEVFTTGADNRFQRLFVSFY 185
            QAW+ KE+    I+G     Y LLP  C+Q+  TN G+IAE +T+     F +LF++  
Sbjct: 291 NQAWKCKEKAKERIFGLPHNSYKLLPWLCKQLMETNSGTIAE-WTSSDKGNFMQLFIAHG 349

Query: 186 ASIYGFLNGCVPIIALGGIQLKSKYLGTLLVATSFDADGGLFPVAFGVVDLENDESWMWF 245
            S++GFL GC PII++    L   + G L  A ++DAD  +FP+A+ +V  EN  +W WF
Sbjct: 350 FSVHGFLMGCRPIISINSSNLSGPHKGALFSALAYDADDDMFPLAYAIVSSENYYNWFWF 409

Query: 246 LSELQNALDMNTDNMPQFTFLSDGPKGIIDAVRRKFPSSSHAFCMRHLSDS------IGK 299
           L  L+  +        +   +S     II +V   F   +HA+C+RHL +       +G+
Sbjct: 410 LQRLKQLV-----GEMEVVIISGRHHAIIRSVAEVFGVENHAYCLRHLKEDFSHQLMMGR 464

Query: 300 EFKNSRLVHLLWKAACATTTIGFKEKMVEISEVSSAAAKWLQQFPPSQWALVYFEGTRYG 359
           E K++ L  LL   A A   IG+   M  +    +  AKW++   P  WA+  F   R+ 
Sbjct: 465 EGKDNAL-KLLDAVAYARLEIGYNSAMENLRRFDANLAKWVEDNNPEHWAMSKFPKKRWD 523

Query: 360 HLSSNI-EEFNRWILEARELPIIQVIERIHSKLIAEFEDRRLKSNSWFSVLAPSAEKRMI 418
            +++NI    + W+ E +   I   IE+    L +   + +    SW   + P  E +++
Sbjct: 524 KMNTNIFGSISAWVKEEQHHTIFSFIEKHMDMLASLLVECKTTMQSWERSIGPKTEDKLL 583

Query: 419 EAINRASTYQVLRSDEVEFEV 439
             I ++ T    ++    +E+
Sbjct: 584 HNIAKSKTVSDGKAKISNYEI 604


>GSVIVT01023955001 assembled CDS
          Length = 701

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 121/285 (42%), Gaps = 26/285 (9%)

Query: 208 SKYLGTLLVATSFDADGGLFPVAFGVVDLENDESWMWFLSELQNALDMNTDNMPQFTFLS 267
           +KY   LL      +    F VAF  +  E +E+  W L  L++ +D   D M     ++
Sbjct: 111 NKYQLPLLEVVGVTSTEKTFSVAFAYLGSEREEAHTWALERLRSMID---DAMLPRVVMT 167

Query: 268 DGPKGIIDAVRRKFPSSSHAFCMRHLSDSIGKEFK-----NSRLVHL--LWKAACATTTI 320
           D    +++A+++ FP +S+  C  H+S +I    K      SRL     +W       T 
Sbjct: 168 DREPSLMNALQKVFPMASNLLCRWHISTNILANCKIFFESKSRLDAFISMWNIVVLAET- 226

Query: 321 GFKEKMVEISEVSSAAAKWLQ--QFPPSQWALVYFEG---------TRYGHLSSNIEEFN 369
              E    ++++ S   +++Q   +   QW L Y E            +G+ + N  E  
Sbjct: 227 -EDEYANRLNQLESHFHRYIQAINYCKEQWLLPYKEKFVAVWTNKVMHFGNTTVNRAEST 285

Query: 370 RWILEARELPIIQV-IERIHSKLIAEFEDRRLKSNSWFSVLAPSAEKRMIEAINRASTYQ 428
           R  L+ R+L + +  IE    K+ +  E + +   + F +   + +    + +       
Sbjct: 286 RAKLK-RQLGLSRGDIESSWPKIHSLLELQHIDIKTSFEISLTNVQHNFKDPLYGEVRGS 344

Query: 429 VLRSDEVEFEVISAERSNIVNIGTHSCSCRDWQLHGIPCSHAVAA 473
           V +S  +   V  A RS  + +   +C C   + HG+PC+H +++
Sbjct: 345 VSKS-ALCILVDEANRSESIGVDASACGCVYSRTHGLPCAHEISS 388