Jatropha Genome Database

JcCA0298021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0298021.20 - phase: 0 
         (582 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007978001 assembled CDS                                       586   e-167
GSVIVT01003228001 assembled CDS                                       392   e-109

>GSVIVT01007978001 assembled CDS
          Length = 524

 Score =  586 bits (1510), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 305/568 (53%), Positives = 378/568 (66%), Gaps = 63/568 (11%)

Query: 15  KYTDQGFSQLSRLRVRRFGSSTMTLTKILASGLVALPLLFALATVLRHPPSDRFFGFAEA 74
           + +D     +SR   R    + M L  IL   L+ + +LF+++ VLR PPSD  +   E 
Sbjct: 13  RLSDPEHHTVSRPLDRECEQNPMRLMGILVVCLMVVSVLFSVSVVLRDPPSDGVWASEET 72

Query: 75  RVLQNGAQPNVTAFESIGLGLGSENVLLQFTDKPNDKLLAGLLAAGFDEAACTSRYQSSF 134
           + LQ   + +            +E+ L    ++P DKLL GLL AGF+E +C SRYQS+ 
Sbjct: 73  KFLQVNPRKD------------AEDNLSWSAEEPKDKLLGGLLDAGFNERSCLSRYQSAL 120

Query: 135 YRKASLYKPSSYLISRLRSYEDLHKRCGPNTESYNKAIEQLKSDRRIVSANDCKYIVWIS 194
           YRK  L+KPSSYL+S+LRSYE LHKRCGP TESYN+ ++QL+  + +   +DC Y+VWIS
Sbjct: 121 YRKELLHKPSSYLLSKLRSYEALHKRCGPYTESYNRTLKQLQLGQHM-EQSDCNYLVWIS 179

Query: 195 FSGLGNRILSLASTFLYALLTNRVLLVDRGKDMDDLFCEPFPENSWLLPMDFPVVEQFGS 254
           FSGLGNRIL+LAS FLYA+LTNRVLLVD G DM DLFCEPFPE SWLLP+DFP+  +F S
Sbjct: 180 FSGLGNRILTLASAFLYAILTNRVLLVDPGADMPDLFCEPFPEVSWLLPLDFPLKNEFNS 239

Query: 255 FDQQSSHCYGNMLKNNVINATEESIR-PXXXXXXXXXXXXXXKLFFCDEDQSLLAKVPWL 313
           FDQ+S  CYG MLKN  +  +  SI  P              K+FFC++DQS L K+P L
Sbjct: 240 FDQKSPFCYGKMLKNKTLTDSSWSILPPYVYLHLVHDYDDHDKMFFCNQDQSFLRKIPCL 299

Query: 314 IMKSDNYFVPSLFLITSFEKELSNLFPQKGTIFHHLGRYLFHPSNPVWGLITRYYKIYLA 373
           I+K+DNYFVPSLFLI SFE+EL                                      
Sbjct: 300 IIKTDNYFVPSLFLIPSFEQEL-------------------------------------- 321

Query: 374 KADESIGIQIRVFDSRPGPFKHVMDQILACTLHEKLLPEVDMQDSVLNLSDNPKLKAVLV 433
                      +FD+  GPF+HV+DQI+ACT+ E LLPE++M++ V++   + K KAVL+
Sbjct: 322 -----------IFDTGIGPFQHVLDQIIACTMTENLLPEINMREPVVSSYGHKKSKAVLM 370

Query: 434 TSLNSGYSENLRNMYWEYPTRTGEVVGVYQPSHEEYQQTEKYIHNRKAWAEMYXXXXXXX 493
           TSL++GY E +RNMYWE+PT TGEV+GVYQPSHEEYQQTEK  HNRKAWAEMY       
Sbjct: 371 TSLSAGYFEKVRNMYWEHPTVTGEVIGVYQPSHEEYQQTEKQNHNRKAWAEMYLLSLTDV 430

Query: 494 XXXXXXXXFGYVAQGLGGLRPWILYKPENETAPDPPCRRAISMEPCFHAPPYYDCKAKRG 553
                   FGYVAQGLGGL+PWILYKPEN+TAPDPPCRRA+SMEPCFHAPP+YDCKAK+G
Sbjct: 431 LVTSSWSTFGYVAQGLGGLKPWILYKPENQTAPDPPCRRAMSMEPCFHAPPFYDCKAKKG 490

Query: 554 TDTGALVPHVRHCEDMNWGLKVVDGHDE 581
            DTGALVPHVRHCEDM+WGLK+VD   E
Sbjct: 491 VDTGALVPHVRHCEDMSWGLKLVDDSQE 518


>GSVIVT01003228001 assembled CDS
          Length = 474

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/344 (60%), Positives = 246/344 (71%), Gaps = 11/344 (3%)

Query: 27  LRVRRFGSSTMTLTKILASGLVALPLLFALATVLRHPPSDRFFGFAEARVLQNGAQPNVT 86
           + V + GS  M+ TK LA  L++LP LF L  + R+PPSD    F EARVL     P + 
Sbjct: 1   MAVIKSGSGAMSFTKALAVSLISLPFLFTLFVLYRNPPSDPTPDFREARVLD--VPPRIV 58

Query: 87  AFESIGLGLGSENVL----LQFTDKPNDKLLAGLLAAGFDEAACTSRYQSSFYRKASLYK 142
                 L LG++ V      Q  D   D LL GLLAAGF E +C SRYQS+ YRK S YK
Sbjct: 59  N----ALKLGTKTVFNDNSSQPADMSKDSLLGGLLAAGFGEKSCLSRYQSALYRKISPYK 114

Query: 143 PSSYLISRLRSYEDLHKRCGPNTESYNKAIEQLKSDRRIVSANDCKYIVWISFSGLGNRI 202
           PSSYL+SRLR YEDLHK CGP+T+SY K I+ LKS    V   DC Y+VWIS+SGLGNRI
Sbjct: 115 PSSYLLSRLRKYEDLHKHCGPHTKSYRKTIKLLKSGHS-VGPTDCNYVVWISYSGLGNRI 173

Query: 203 LSLASTFLYALLTNRVLLVDRGKDMDDLFCEPFPENSWLLPMDFPVVEQFGSFDQQSSHC 262
           L+LAS FLYALLTNRVLLVDRGKDM DLFCEPFPE SWLLP+DFP++ +F S +++S HC
Sbjct: 174 LTLASAFLYALLTNRVLLVDRGKDMADLFCEPFPEKSWLLPLDFPLLPKFNSINKESPHC 233

Query: 263 YGNMLKNNVINATEESIRPXXXXXXXXXXXXXXKLFFCDEDQSLLAKVPWLIMKSDNYFV 322
           +G MLKNN+IN++ E   P              KLFFCD++Q+LL KVPWLIMK++NYFV
Sbjct: 234 FGKMLKNNIINSSTEQPPPFLYIYLSHDYGDHDKLFFCDQEQTLLGKVPWLIMKTNNYFV 293

Query: 323 PSLFLITSFEKELSNLFPQKGTIFHHLGRYLFHPSNPVWGLITR 366
           PSLFL+ SFE+ELS LFP+K T FHHLGRYLFHPSN VWGLITR
Sbjct: 294 PSLFLMPSFEQELSKLFPEKETTFHHLGRYLFHPSNQVWGLITR 337



 Score =  223 bits (567), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 107/138 (77%)

Query: 445 RNMYWEYPTRTGEVVGVYQPSHEEYQQTEKYIHNRKAWAEMYXXXXXXXXXXXXXXXFGY 504
           RNMYWE    +GEVV VYQPSHEE QQ+EK  HNRKAWAEMY               FGY
Sbjct: 337 RNMYWEQSAMSGEVVSVYQPSHEEVQQSEKQGHNRKAWAEMYLLSTTEALITSAWSTFGY 396

Query: 505 VAQGLGGLRPWILYKPENETAPDPPCRRAISMEPCFHAPPYYDCKAKRGTDTGALVPHVR 564
           VAQGLGG+ PWILYKP+N TAPDPPC RA+SMEPCFHAPP+YDCKAK G DTGALVPHVR
Sbjct: 397 VAQGLGGVTPWILYKPQNRTAPDPPCGRAMSMEPCFHAPPFYDCKAKTGVDTGALVPHVR 456

Query: 565 HCEDMNWGLKVVDGHDEL 582
           HCEDM+WGLK+V  H EL
Sbjct: 457 HCEDMSWGLKLVGRHREL 474