Jatropha Genome Database

JcCA0297911.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297911.20 - phase: 1 /partial
         (346 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023127001 assembled CDS                                       445   e-125

>GSVIVT01023127001 assembled CDS
          Length = 730

 Score =  445 bits (1144), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 206/327 (62%), Positives = 258/327 (78%), Gaps = 6/327 (1%)

Query: 1   KLDSIWRD---SIDDGCHNPSWPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDAVQI 57
           K D IW      ++ G  N SWPEFVP+SG +KTRKMDYIRYGGH LIG+RGPR DA  +
Sbjct: 358 KSDVIWNSPDGEVEQG--NTSWPEFVPTSGPDKTRKMDYIRYGGHILIGVRGPRADAAIL 415

Query: 58  RKEIIEFCDAKLGIRLDNSKIEIEHITRGIQFLDHIICRRVIYPTLHYTASGGKIVSERG 117
           RK++IEFCD K  ++LD+  + IEHIT+GI FLDH++CRRV+YPTL YTA+GGKI+SE+G
Sbjct: 416 RKQLIEFCDQKYMLKLDSESLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIISEKG 475

Query: 118 VGTLLSVTASLQQCIRQFRRLQFVKGDKDPEPLPCNPMLYSSQAHTNAQMNKFLETMADW 177
           VGTLLSVTASL+QCI+QFR+L F+KGD+DP+P PC  M +++QAHTNAQMNK L TM +W
Sbjct: 476 VGTLLSVTASLKQCIKQFRKLSFLKGDRDPDPQPCFRMFHATQAHTNAQMNKLLSTMVEW 535

Query: 178 YRYADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASRDLSRPLRESSNNSAPE 237
           YRYADNRKKVV FC+Y+IR SLAKLYAA+Y+L+SRAKVYKI +R+LSRPL+E    S PE
Sbjct: 536 YRYADNRKKVVNFCSYIIRGSLAKLYAAKYKLRSRAKVYKIGARNLSRPLKEKKGQS-PE 594

Query: 238 YSDLLRMGLVDAIEGVQFSHMSLIPSCDYTPFPRNWIPDHERVLHEYIRLQDPKFFCELW 297
           Y +LLRMGLV++I+G+ ++ MSL+P  DY+PFP NW PDHE+ L EYI+L D K   E  
Sbjct: 595 YHNLLRMGLVESIDGLHYTRMSLVPETDYSPFPSNWRPDHEKALLEYIKLDDSKTLEEQR 654

Query: 298 RSIKHQSLTLPQDEISEIVWDYKTLGI 324
             ++   L  PQD IS +VW+YK   I
Sbjct: 655 SCLREHGLVSPQDYISMLVWNYKRNAI 681