Jatropha Genome Database

JcCA0297911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297911.10 - phase: 0 
         (100 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021434001 assembled CDS                                        75   7e-15
GSVIVT01000482001 assembled CDS                                        65   9e-12

>GSVIVT01021434001 assembled CDS
          Length = 145

 Score = 74.7 bits (182), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 56/100 (56%), Gaps = 12/100 (12%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIA 60
           M+EEGK+RG++   + Q  Y GTFQGVANY                      I     + 
Sbjct: 1   MSEEGKSRGLSGQQSNQIPY-GTFQGVANY----------PPLPPAHHPQPVIGIPQPVP 49

Query: 61  NPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
            P Y+ HGY +   GYAV+EGRPVRE RLPCCG+G+GW L
Sbjct: 50  PPGYYSHGYQT-VPGYAVVEGRPVRERRLPCCGIGIGWLL 88


>GSVIVT01000482001 assembled CDS
          Length = 143

 Score = 64.7 bits (156), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 48/100 (48%), Gaps = 13/100 (13%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIA 60
           M+EE KNR          Q+YGTFQGV  Y                              
Sbjct: 1   MSEESKNR--------SDQHYGTFQGVPTY----SQPPAVGFPQPVPPPGAAEPSAPPPP 48

Query: 61  NPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
            PQY+ HGY +   GYAV EG PVRE RLPCCG+G+GWFL
Sbjct: 49  PPQYYAHGYQA-VPGYAVAEGTPVRERRLPCCGIGLGWFL 87