Jatropha Genome Database

JcCA0297821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297821.20 - phase: 0 /partial
         (93 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025322001 assembled CDS                                       148   4e-37

>GSVIVT01025322001 assembled CDS
          Length = 418

 Score =  148 bits (374), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/76 (92%), Positives = 73/76 (96%)

Query: 1   VVGKKYIRLYPASLSEELYPYSETMLHNSSQVDLDNMDEKEFPKVHDLEFLDCILEEGEM 60
           VVGKKYIRLYPASLSEELYPY+ETML NSS+VDLDN+DEKEFPKV DLEF DCILEEGEM
Sbjct: 214 VVGKKYIRLYPASLSEELYPYTETMLCNSSKVDLDNIDEKEFPKVKDLEFQDCILEEGEM 273

Query: 61  LYIPPKWWHYVRSLTT 76
           LYIPPKWWHYVRSLTT
Sbjct: 274 LYIPPKWWHYVRSLTT 289