Jatropha Genome Database

JcCA0297261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297261.10 + phase: 0 /partial
         (72 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032425001 assembled CDS                                       101   6e-23
GSVIVT01007681001 assembled CDS                                        94   1e-20

>GSVIVT01032425001 assembled CDS
          Length = 775

 Score =  101 bits (252), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 59/72 (81%)

Query: 1   MLNSGGAIQSLDIDDDKNLVRIGVKGRGEMKVFASEKPVACKLDGVDVQFSYDDQVVVIQ 60
           MLNSGGAI+SL  DD++N VRIGVKG GEM+ FA+EKP +C+++G +V F YD+ +V+IQ
Sbjct: 700 MLNSGGAIESLAFDDEENSVRIGVKGTGEMRAFAAEKPRSCRINGEEVAFGYDECMVIIQ 759

Query: 61  VPWPNSSRLSAI 72
           VPWPNSS  S I
Sbjct: 760 VPWPNSSNPSLI 771


>GSVIVT01007681001 assembled CDS
          Length = 780

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 58/72 (80%)

Query: 1   MLNSGGAIQSLDIDDDKNLVRIGVKGRGEMKVFASEKPVACKLDGVDVQFSYDDQVVVIQ 60
           MLN GGA++ +++D+D++ V+IGVKG GEMK FASEKP  CK++G  V+FSY+   V +Q
Sbjct: 705 MLNGGGAVEWVELDEDEDRVKIGVKGCGEMKAFASEKPTTCKINGEGVKFSYEAHTVGVQ 764

Query: 61  VPWPNSSRLSAI 72
           VPWP+SS++S +
Sbjct: 765 VPWPSSSQVSIV 776