Jatropha Genome Database

JcCA0297121.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297121.20 - phase: 2 /partial
         (97 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003351001 assembled CDS                                       114   1e-26
GSVIVT01003346001 assembled CDS                                       114   1e-26

>GSVIVT01003351001 assembled CDS
          Length = 419

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 57/63 (90%)

Query: 1   TINGCNLRPGDLLGTGTISGPEPESYGCLLELTWNGQKPLSLNGATRKFLEDGDEVIFSG 60
           TINGCNLRPGDLLGTGTISGPEPES GCLLELTWNGQKP+SL+G TR FLEDGDEV  +G
Sbjct: 337 TINGCNLRPGDLLGTGTISGPEPESLGCLLELTWNGQKPVSLDGTTRGFLEDGDEVTITG 396

Query: 61  FSK 63
           + K
Sbjct: 397 YCK 399


>GSVIVT01003346001 assembled CDS
          Length = 8769

 Score =  114 bits (284), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 57/63 (90%)

Query: 1    TINGCNLRPGDLLGTGTISGPEPESYGCLLELTWNGQKPLSLNGATRKFLEDGDEVIFSG 60
            TINGCNLRPGDLLGTGTISGPEPES GCLLELTWNGQKP+SL+G TR FLEDGDEV  +G
Sbjct: 8687 TINGCNLRPGDLLGTGTISGPEPESLGCLLELTWNGQKPVSLDGTTRGFLEDGDEVTITG 8746

Query: 61   FSK 63
            + K
Sbjct: 8747 YCK 8749