Jatropha Genome Database
- JcCA0297121.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0297121.10 - phase: 0 /partial
(175 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01038271001 assembled CDS 88 2e-18
GSVIVT01017151001 assembled CDS 68 3e-12
GSVIVT01017147001 assembled CDS 67 4e-12
GSVIVT01017545001 assembled CDS 65 2e-11
GSVIVT01025417001 assembled CDS 57 3e-09
GSVIVT01015512001 assembled CDS 54 5e-08
GSVIVT01021505001 assembled CDS 52 2e-07
GSVIVT01022227001 assembled CDS 51 3e-07
GSVIVT01026912001 assembled CDS 49 1e-06
GSVIVT01008973001 assembled CDS 47 4e-06
>GSVIVT01038271001 assembled CDS
Length = 365
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 114 PPQFGLNIYNATYNTWQKTEFPGKIPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYIL 173
P Q+GL+I+NATY TW + P IPMFC C+A+PS+ KLL+LG WD TL+PVPDVY+L
Sbjct: 30 PYQYGLSIFNATYQTWHQM-MPSSIPMFCHCVALPSSGKLLLLGGWDPTTLDPVPDVYVL 88
Query: 174 DL 175
+L
Sbjct: 89 NL 90
>GSVIVT01017151001 assembled CDS
Length = 422
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 23/160 (14%)
Query: 18 QLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
IPGLPD++A +CL++V + S + +VC W++ + +P F++ R +G + + + Q
Sbjct: 106 DFIPGLPDDVARQCLIRVSYENFSTIAAVCRVWKSEVEDPDFFRQRKTAGYTRPVFAMAQ 165
Query: 78 P--LPSLDSIQSLTTTIAIAKKEDKLEHXXXXXXXIHSPPQFGLNIYNATYNTWQKTEFP 135
+P+ S T+A LE PP G F
Sbjct: 166 ARVVPNRSSGGMKCPTLAYRVTLLDLETGNWSEL----PPVPG---------------FS 206
Query: 136 GKIPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYILDL 175
+PMFCQ + + S +L+++G WD DT E V+I +
Sbjct: 207 DGLPMFCQLVGVES--ELVVVGGWDPDTWEISSSVFIYNF 244
>GSVIVT01017147001 assembled CDS
Length = 315
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 31/163 (19%)
Query: 19 LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQP 78
IPGLPD++A +CL++V + S + +VC W++ + +P F++ R +G + + Q
Sbjct: 3 FIPGLPDDVARQCLIRVYYEKFSTIAAVCRVWKSEVEDPDFFRQRKTAGYTRPVFAKAQA 62
Query: 79 --LPSLDSIQSLTTTIAIAKKEDKLEHXXXXXXXIHSPPQFGLNIYNATYNTWQKT---- 132
+P+ S T+A + + + + W++
Sbjct: 63 RVVPNRSSGGMKCPTLA-----------------------YRVTLLDLETGNWRELPPVP 99
Query: 133 EFPGKIPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYILDL 175
F +PMFCQ + + S +L+++G WD DT E V+I +
Sbjct: 100 GFSDGLPMFCQLVGVES--ELVVVGGWDPDTWEVSSSVFIYNF 140
>GSVIVT01017545001 assembled CDS
Length = 348
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 33/165 (20%)
Query: 17 QQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLV 76
+QLIPGLPD+IA+ECL+++P S VC W+ + +P F + R +G + +I +
Sbjct: 2 EQLIPGLPDDIALECLIRLPYNHLSTASLVCPPWKLHLRHPDFLRHRKAAGFTTNIIVMA 61
Query: 77 QPLPSLDSIQSLTTTIAIAKKEDKLEHXXXXXXXIHSPP--QFGLNIYNATYNTWQKT-E 133
Q P ++ +++ PP +GL +Y +W +
Sbjct: 62 QSPPQTNTGKAI-------------------------PPADSYGLTLYEPDSGSWSELPP 96
Query: 134 FPG---KIPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYILDL 175
PG +PM C + + L+++G +D +T E V++ ++
Sbjct: 97 LPGMNRGLPMHCGLVGV--GLDLVVIGGYDPETWESSNAVFVYNV 139
>GSVIVT01025417001 assembled CDS
Length = 412
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 19 LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
L+PGLPD++A+ CL++VP H ++ VC W L+S FY LR G +E+ + +++
Sbjct: 77 LLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWHRLLSGNFFYSLRKSLGMAEEWVYVIK 135
>GSVIVT01015512001 assembled CDS
Length = 398
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 19 LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
L+PGLPD++A+ CL++VP H ++ VC W L+ +Y LR G +E+ I +++
Sbjct: 67 LLPGLPDDLAIACLIRVPRIEHRKLRLVCKRWYRLLVGNFYYSLRKNLGIAEEWIYVIK 125
>GSVIVT01021505001 assembled CDS
Length = 429
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 19 LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLK 65
LIPGLPD+IA+ CL+++P Q H+ ++VC W L+ N + R K
Sbjct: 62 LIPGLPDDIALNCLLRLPVQSHAACRAVCKRWHLLLGNKERFFTRRK 108
>GSVIVT01022227001 assembled CDS
Length = 344
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 18 QLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLR 63
LIP LPD++A++C+ +VP H ++ VC SW++++++P F+ R
Sbjct: 21 DLIPNLPDDVALQCIARVPRSRHPHLLLVCKSWRSILNSPDFFSTR 66
>GSVIVT01026912001 assembled CDS
Length = 359
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 19 LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLK 65
LI GLPD+IA+ CL +VP ++H+ +K V W++L+S+ ++ R K
Sbjct: 21 LICGLPDDIALICLARVPRKYHTLLKCVSRRWRDLVSSEEWHAYRQK 67
>GSVIVT01008973001 assembled CDS
Length = 274
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 42/70 (60%)
Query: 4 EKNSIKNYMGVENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLR 63
++ + + EN +LIP LPDEI++ L ++P + +++ V +W+ I++P + LR
Sbjct: 27 KRQRMSSSFNEENPRLIPSLPDEISILILARLPRICYFDLRLVSRNWKATITSPELFNLR 86
Query: 64 LKSGNSEQLI 73
+ G +E+ +
Sbjct: 87 KELGKTEEWL 96