Jatropha Genome Database

JcCA0296911.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296911.20 - phase: 2 /partial
         (343 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011428001 assembled CDS                                       455   e-128
GSVIVT01011418001 assembled CDS                                       162   3e-40
GSVIVT01019984001 assembled CDS                                       150   7e-37
GSVIVT01029552001 assembled CDS                                       114   9e-26
GSVIVT01008290001 assembled CDS                                       110   8e-25

>GSVIVT01011428001 assembled CDS
          Length = 338

 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/323 (69%), Positives = 265/323 (82%), Gaps = 5/323 (1%)

Query: 16  MELEVSKIGFED-QDFDAFYNKYAERMRWFDVLNYERTCGISTILNKQIGTPNSFESIED 74
           ME E+   G +D ++ D FYNKY ERM WFDVLN ERTCGIS +LNKQ+G PNSFESIE 
Sbjct: 1   MERELVSHGVDDNEESDPFYNKYTERMGWFDVLNNERTCGISAMLNKQLGAPNSFESIEP 60

Query: 75  EDFSVSPYMSWDKRARKRLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAITTSQNG 134
            DFS+ P+MSW K +R++LLRS+ESDFE+VYVAQSCLSWEALHHQYR+VEALA   SQ G
Sbjct: 61  VDFSI-PFMSWSKMSRRKLLRSLESDFEMVYVAQSCLSWEALHHQYRRVEALA--CSQTG 117

Query: 135 IFSHHVAEELQKFKVLLERFMEDERFEGKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKEE 194
            F ++VA + QKF+VLLERFMEDER EGKR  NY RGRFS KSLLQVP+VSGF E  KE 
Sbjct: 118 FFYNNVAGKFQKFQVLLERFMEDERCEGKRFTNYARGRFSLKSLLQVPEVSGFVEAEKEG 177

Query: 195 MKIEGINVKEVLKAIERCILVFWVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLKLLVDLT 254
           ++ E +  +EVLKAIE+CI  FWVFVK DNKK W KFRS LWT+PPVEDPRDL+LL DL+
Sbjct: 178 VRGEAMRPREVLKAIEKCIKAFWVFVKTDNKKCWPKFRSLLWTHPPVEDPRDLELLADLS 237

Query: 255 RNLQKKELWLKDSQGKQRCWF-RKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSVISSTQ 313
           + LQKKELW+KD QGK+RCW  R +  PL ESQ+K++LFTMID+KLVSRVL +S+ISS+Q
Sbjct: 238 KRLQKKELWMKDLQGKKRCWLKRSMANPLGESQKKEMLFTMIDMKLVSRVLHMSLISSSQ 297

Query: 314 LKWCQEKLDNIEFKEGKIVRACS 336
           L WCQEKLDNIEFKEG ++R C+
Sbjct: 298 LNWCQEKLDNIEFKEGNVIRECT 320


>GSVIVT01011418001 assembled CDS
          Length = 663

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/356 (32%), Positives = 189/356 (53%), Gaps = 38/356 (10%)

Query: 1   PNVLAENQDTNESPAMELEVSKIGFEDQDFD---------AFYNKYAERMRWFDVLNYER 51
           P +L E+    ESP M  ++     +D+ F            Y  Y+ERMR FD+LNY++
Sbjct: 310 PTILEES----ESPKMMEDLKPWKIDDKKFQHEERMDELHKIYKLYSERMRKFDILNYQK 365

Query: 52  TCGISTILNKQIGTPNSFESIEDEDFSVSPY---MSWDKRARK-------RLLRSIESDF 101
              I  + +K     +  +SI  +  SV  +   +S + R +K       + ++ + SD 
Sbjct: 366 MYAIGFLQSK-----DPLQSISGQKSSVPAFTSLLSQNFRRKKSETDPMVKFIKELHSDL 420

Query: 102 ELVYVAQSCLSWEALHHQYRKVEALAITTSQNGIFSHHVAEELQKFKVLLERFMEDERFE 161
           E+VYV Q CLSWE LH QY +   L  +  +     + VA E Q+F+VL++RF+E+E F+
Sbjct: 421 EMVYVGQLCLSWEFLHWQYERALELWESDPRGIRRYNEVAGEFQQFQVLMQRFIENEPFQ 480

Query: 162 GKRVWNYVRGRFSFKSLLQVP--KVSGFFEQAKEEMKI---EGINVKEVLKAIERCILVF 216
           G RV NYV+ R   ++LLQVP  +     EQ +   K    + I    +++ +E  I +F
Sbjct: 481 GPRVQNYVKNRCVLRNLLQVPVMREDSLKEQKRARRKGPDNDTITSDMLVEIMEESIRIF 540

Query: 217 WVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLKLLVDLTRNLQKKELWLKDSQGKQRCWFR 276
           W FV+ D  +S    +    T+  +++P + +L +++  +LQKKE  LK+      C  +
Sbjct: 541 WRFVRADKLES----KGRKGTHVELQNPEESQLFIEIRTSLQKKEKRLKEILRSGNCILK 596

Query: 277 KVVKPLEESQRKDL-LFTMIDIKLVSRVLQLSVISSTQLKWCQEKLDNIEFKEGKI 331
           K  K  E+   + L  F+ +D++LV+RVL +S I+S QL WC+ KL+ I F   +I
Sbjct: 597 KFQKHREDDGDQVLYFFSQVDMRLVARVLSMSRITSEQLVWCRNKLNTINFVSRRI 652


>GSVIVT01019984001 assembled CDS
          Length = 923

 Score =  150 bits (380), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 164/313 (52%), Gaps = 24/313 (7%)

Query: 33  FYNKYAERMRWFDVLNYERTCGISTILNKQIGTPNSFESIEDEDFSVSPYMSWDKRARKR 92
           FY +YA++MR  D+LNY+    IS +   Q+  P    S +    S    +   K A+ R
Sbjct: 611 FYQRYADKMRKLDILNYQTVHAISFL---QLKDPVQLNSNKTPSASALKSLLSQKTAKLR 667

Query: 93  ---------LLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAITTSQNGIFSHH--VA 141
                    L+R +++D E++YV Q CLSWE L  QY K  AL +       F  +  V 
Sbjct: 668 RLQDGPTLNLIRELKNDLEMIYVGQLCLSWEMLQWQYGK--ALELQEYDPDGFRQYSEVT 725

Query: 142 EELQKFKVLLERFMEDERFEGKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKEEMKIEG-- 199
            E Q+F+VL++RF+E+E F+G RV  YV+ R+    LLQVP +     + K+EM   G  
Sbjct: 726 SEFQQFQVLVQRFIENEPFQGPRVQCYVKNRYLIHKLLQVPAIKDDCIKDKKEMIETGQD 785

Query: 200 -INVKEVLKAIERCILVFWVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLKLLVDLTRNLQ 258
            I +  + +AIE+ + VFW F+  D      +          ++ P D++LL+D+   L 
Sbjct: 786 AITIAMLTEAIEKSMHVFWDFLHADKHVKGLQ-----GNQVDLQSPADVELLMDIQTGLH 840

Query: 259 KKELWLKDSQGKQRCWFRKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSVISSTQLKWCQ 318
           KKE  LK+    + C  +++ K  E+   + L F  ++++L+SR L +S +++ QL WCQ
Sbjct: 841 KKEKKLKELLRSKNCIVKRLQKHREDRLDRSLFFAKVELRLISRALNMSRLTTDQLAWCQ 900

Query: 319 EKLDNIEFKEGKI 331
           +KL  I     KI
Sbjct: 901 KKLSQINIVNRKI 913


>GSVIVT01029552001 assembled CDS
          Length = 424

 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 166/342 (48%), Gaps = 62/342 (18%)

Query: 30  FDAFYNKYAERMRWFDVLNYER--TCGISTIL-------NKQIGTP------NSFESIED 74
           F+  ++KY ERM +FD ++ ++    G    L       +K++ +P         E  ED
Sbjct: 115 FNDVFDKYCERMLFFDRMSAQQLNEAGSDVPLTPSPRSASKKLSSPFRCLSLKKMEEAED 174

Query: 75  EDFSV-----SPYMSWDKRARKRLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAIT 129
           E   +     +PY                 D E  YVA  CL+WEALH QY ++      
Sbjct: 175 EAEHLQKPDNNPY----------------QDLETAYVAHICLTWEALHCQYTQLSQKISC 218

Query: 130 TSQNGIFSHHVAEELQKFKVLLERFMEDERFE-GKRVWNYVRGRFSFKSLLQVPKVSGFF 188
             +N    +H A++ Q+F+VLL+RF+E+E FE G RV  Y R R     LLQVP V    
Sbjct: 219 QPENPTCYNHSAQQFQQFQVLLQRFIENEPFEQGPRVEIYARARNLLPKLLQVPNVQDSD 278

Query: 189 EQAKEEMKIEGINVKEVLKAIERCILVFWVFVKIDNKKSWWK---FRSSLWTYPPVEDPR 245
           +   EE     +   ++++ IE  IL F +F+K+D KKS      F     T  P++   
Sbjct: 279 QTRMEEESDFLVLASDLIRIIESSILTFHLFLKMDKKKSSGVLNLFGGQNQTATPLQ--- 335

Query: 246 DLKLLVDLTRNLQKKELWLKD-----SQGKQRCWFRKVVKPLEESQRKDLLFTMIDIKLV 300
                  +   L+KKE+ LK+        K++ W      P   ++  ++LF +IDIK++
Sbjct: 336 ------QIQSFLEKKEMKLKELRRKQKGRKKKSW------PATHAE-VEMLFGLIDIKVL 382

Query: 301 SRVLQLSVISSTQLKWCQEKLDNIEFKEGKIVRACSSGPLFP 342
           SRVL++  I+  QL WC+ K++ +E  +GK+ R  S   LFP
Sbjct: 383 SRVLRMERITKEQLLWCEGKMNKLELLDGKLQRDPSPT-LFP 423


>GSVIVT01008290001 assembled CDS
          Length = 601

 Score =  110 bits (276), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 164/331 (49%), Gaps = 54/331 (16%)

Query: 34  YNKYAERMRWFDVLNYER-----------TC--GISTILNKQIGTPNSFESIEDEDFSVS 80
           + KY E M + D ++ ++            C   IS  +  ++GT N   S    D   +
Sbjct: 302 FQKYDEEMTFLDRISAQKLQETESLRSIQVCPKSISGRIAHKLGTINKRSS----DTHQN 357

Query: 81  PYMSWDKRARKRLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAITTSQNGIFS-HH 139
           PY                 + E  YVAQ CL+WEAL+  Y+  + L  +  +    S  H
Sbjct: 358 PY----------------HELEAAYVAQICLTWEALNWNYKNFQRLRASRRECDPGSPAH 401

Query: 140 VAEELQKFKVLLERFMEDERFE-GKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKEEMKIE 198
           +A++ Q+F+VLL+R++E+E +E GKR   Y R R     LLQVP+     +  K+E    
Sbjct: 402 IAQQFQQFQVLLQRYIENEPYEHGKRPEIYARMRILAPKLLQVPEYRDSEDDQKDESLKS 461

Query: 199 GINVKEVLKAIERCILVFWVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLKLLVDLT---- 254
            I+    L  +E  I  F  F+K D +K   +  ++L+        R+ K LVD T    
Sbjct: 462 RISSDSFLIILEEGIRTFMNFLKGDREKPC-QIIAALFK-------RNRKGLVDPTLLHL 513

Query: 255 --RNLQKKELWLKDSQGKQRCWFRKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSVISST 312
             +  QKK+L LKD +   +C  ++ +K  EE +   +L  +IDIK+VSRVL++S I+  
Sbjct: 514 MKKANQKKKLRLKDLRRTGKCLRKRRLKEEEEME---ILMGLIDIKVVSRVLRMSDITEE 570

Query: 313 QLKWCQEKLDNIEFKEGKIVRACSSGPLFPP 343
           QL WC+EK+  +   EGK+ R   S PLF P
Sbjct: 571 QLHWCEEKMSKVRVLEGKLQR--DSSPLFFP 599