Jatropha Genome Database

JcCA0296911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296911.10 - phase: 0 /partial
         (296 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011429001 assembled CDS                                       208   2e-54
GSVIVT01038557001 assembled CDS                                        61   6e-10

>GSVIVT01011429001 assembled CDS
          Length = 788

 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 150/352 (42%), Positives = 194/352 (55%), Gaps = 61/352 (17%)

Query: 1   MASIGSLPSILETKRESFILLHGRSQQRPRFPFLWYRPQRAFSFAVSNG---GFS----L 53
           MAS+G +  +  T+R + I   GR + RPRF F  YR + +   A+S     G+S    +
Sbjct: 6   MASVGCVSFV--TERAASIW-SGRDR-RPRFSFPVYRLRMSPGCAISKDSIFGYSREDCV 61

Query: 54  RF-----------KPVRATAK---EGVNDDGSDDPLQATIEKSKKVLALQRDLLQQ---- 95
           RF           + VRA  +   EG + D  +D   ATIEKSKKVLA+QRDLLQQ    
Sbjct: 62  RFSLCSRRQVLGSRGVRARGEGSVEGEDGDRLEDAFDATIEKSKKVLAMQRDLLQQNGHE 121

Query: 96  ------------------------ISERRKLVXXXXXXXFDQEIDRTSYDQRESSLQPDN 131
                                   I+ERRKLV        + E +  SY  R+SS  P+ 
Sbjct: 122 DPKVGVEQDFDVGAASVSVTFNISIAERRKLVSSIKSSIINPEDNEVSYKGRDSSF-PNM 180

Query: 132 ASTSRKNILEQQNGNGGIVPSSYVDSTADELPETASSAVSRSYFKGEEEFEQPKSPKTDS 191
             TS  +    ++ NGGI+  +YV S AD++P   SSA SR + +GE+E  +  S +  S
Sbjct: 181 DLTSTGDSGGDEDYNGGILSGNYVHSNADKVPAALSSATSRGFGEGEKELGKDLSLENPS 240

Query: 192 SVKNSTKQPKDASSEK-------SFLTNTLEVSVINDEKTEGSNESASPEVNNVGSDSMT 244
               + KQ KD S +        SFL+ ++E +   +EK E   E +S EVNN  + SM 
Sbjct: 241 LDLEAPKQLKDTSPKTVWSDPLPSFLSKSVETASPKEEKQEDFRELSSEEVNNEAAVSMG 300

Query: 245 EHAKPPPLAGANVMNVILVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMV 296
           E  KPPPLAG NVMN+ILVAAECAPWSKTGGLGDVAG+LPKALARRGHRVMV
Sbjct: 301 EDVKPPPLAGTNVMNIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMV 352


>GSVIVT01038557001 assembled CDS
          Length = 568

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 259 NVILVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMV 296
           N++ V +E AP+SKTGGLGDV GSLP ALA  GHRVMV
Sbjct: 59  NIVFVTSESAPYSKTGGLGDVCGSLPIALAAHGHRVMV 96