Jatropha Genome Database

JcCA0296871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296871.10 + phase: 0 /partial
         (255 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004811001 assembled CDS                                       169   2e-42
GSVIVT01030488001 assembled CDS                                       161   3e-40
GSVIVT01009273001 assembled CDS                                       105   3e-23
GSVIVT01013790001 assembled CDS                                       101   3e-22
GSVIVT01007715001 assembled CDS                                        99   2e-21
GSVIVT01031241001 assembled CDS                                        96   1e-20
GSVIVT01018257001 assembled CDS                                        94   5e-20

>GSVIVT01004811001 assembled CDS
          Length = 249

 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 82/100 (82%)

Query: 115 MAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTSCVGEDPALDQFMEAY 174
           MAHPHYHRLLAAY NCQKVGAPPEVV            M  TGTSC+GEDPALDQFMEAY
Sbjct: 1   MAHPHYHRLLAAYANCQKVGAPPEVVARLEEACASEAAMVRTGTSCIGEDPALDQFMEAY 60

Query: 175 CEMLTKYEQELSKPFKEAMLFLQRVECQFKALTVSSPNSG 214
           CEMLTKYEQELSKPFKEAMLFL RVECQFKALTVSS +S 
Sbjct: 61  CEMLTKYEQELSKPFKEAMLFLSRVECQFKALTVSSSDSA 100


>GSVIVT01030488001 assembled CDS
          Length = 248

 Score =  161 bits (408), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 81/99 (81%)

Query: 115 MAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTSCVGEDPALDQFMEAY 174
           MAHPHY RLLAAY+NCQKVGAPPEVV            MG + TSCVGEDPALDQFMEAY
Sbjct: 1   MAHPHYPRLLAAYVNCQKVGAPPEVVARLEEACASEEAMGRSATSCVGEDPALDQFMEAY 60

Query: 175 CEMLTKYEQELSKPFKEAMLFLQRVECQFKALTVSSPNS 213
           CEMLTKYEQEL+KPFKEAMLFL R+ECQFKALTV+  +S
Sbjct: 61  CEMLTKYEQELTKPFKEAMLFLSRIECQFKALTVAPSDS 99


>GSVIVT01009273001 assembled CDS
          Length = 341

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 65/101 (64%), Gaps = 2/101 (1%)

Query: 109 SVKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTSC--VGEDPA 166
           ++KAKI+AHP Y  LL AY++CQKVGAPPEVV               +  +C    +DP 
Sbjct: 80  AIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVERLAAVRQEFESRQRSSVTCRDASKDPE 139

Query: 167 LDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKALT 207
           LDQFMEAY +ML KY +EL++P +EA  F++R+E Q   L+
Sbjct: 140 LDQFMEAYYDMLVKYREELTRPLQEATDFMRRIESQLNMLS 180


>GSVIVT01013790001 assembled CDS
          Length = 318

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 110 VKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTS-CVGEDPALD 168
           +KAKI +HP Y RLL AYI+CQKVGAPPE+                   S C+G DP LD
Sbjct: 80  IKAKIASHPCYPRLLEAYIDCQKVGAPPEIACLLDEIRRENDVCKRDAVSTCLGADPELD 139

Query: 169 QFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
           +FME YC+ML KY+ +L++PF EA  FL ++E Q   L
Sbjct: 140 EFMETYCDMLEKYKSDLARPFDEATTFLNKIEMQLGNL 177


>GSVIVT01007715001 assembled CDS
          Length = 319

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 63/106 (59%), Gaps = 1/106 (0%)

Query: 102 SNDGSAASVKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTS-C 160
           S +  +++++AKI  HP Y +LL AYI CQKVGAPPEV                   S C
Sbjct: 72  SGEEVSSAIRAKIATHPLYPKLLHAYIECQKVGAPPEVAYLLEEIRRGSELCRRNAVSTC 131

Query: 161 VGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
           +G DP LD+FME YC++L KY+ +L++PF EA  FL  +E Q   L
Sbjct: 132 LGADPELDEFMETYCDILVKYKSDLARPFDEATAFLNNIETQLNTL 177


>GSVIVT01031241001 assembled CDS
          Length = 310

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 100 MDSNDGSAASVKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTS 159
           +++  G +  +K++I+ HP Y  L++AYI C+KVGAPPE+             M  + + 
Sbjct: 41  VETEAGMSDLIKSQIVNHPRYPNLVSAYIECRKVGAPPEMASLLEEIGRESQPMN-SRSG 99

Query: 160 CVGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
            +G DP LD+FME+YCE+L +Y++ELSKPF EA  FL  +E Q   L
Sbjct: 100 EIGADPELDEFMESYCEVLHRYKEELSKPFDEATSFLSDIESQLSNL 146


>GSVIVT01018257001 assembled CDS
          Length = 170

 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 1/101 (0%)

Query: 107 AASVKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXX-MGPTGTSCVGEDP 165
           +++++ +I  HP Y +LL AYI CQKVGAPPEV                 T ++C+G DP
Sbjct: 18  SSAIRTQIATHPLYPKLLHAYIECQKVGAPPEVAYLLEEIRRGSELCRRNTVSTCLGADP 77

Query: 166 ALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
            LD+FME YC +L KY+ +L++PF EA  FL  +E Q   L
Sbjct: 78  ELDEFMETYCNVLMKYKSDLARPFDEATAFLNNIETQLNTL 118