Jatropha Genome Database

JcCA0296741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296741.10 + phase: 0 
         (122 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033644001 assembled CDS                                       204   5e-54

>GSVIVT01033644001 assembled CDS
          Length = 120

 Score =  204 bits (520), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 100/122 (81%), Positives = 107/122 (87%), Gaps = 2/122 (1%)

Query: 1   MGGKCPSRKVKKRRYSHKTARRSKFLLLFWLRDDAVYEELQKPDVEKKSLPLDEDLPGMG 60
           MGGKCPSRKVKKRRYSHKTARR KFLL   L   + +  L KP+ EKK LP+DEDLPGMG
Sbjct: 1   MGGKCPSRKVKKRRYSHKTARRDKFLLKDILL--STFSILNKPEGEKKPLPVDEDLPGMG 58

Query: 61  QYYCLHCDRYFANVTVRDEHFKTKRHRKRLKQMMGPAPHTQLDADLAGGMGMPDNGPKLM 120
           QYYCLHCDRYFANV VRDEHFKTKRH+KRLKQMMGPAPHTQLDADLA GMG+PDNGPKLM
Sbjct: 59  QYYCLHCDRYFANVAVRDEHFKTKRHKKRLKQMMGPAPHTQLDADLAAGMGLPDNGPKLM 118

Query: 121 SM 122
           S+
Sbjct: 119 SI 120