Jatropha Genome Database

JcCA0296711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296711.20 + phase: 0 /pseudo/partial
         (313 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003194001 assembled CDS                                       486   e-138

>GSVIVT01003194001 assembled CDS
          Length = 407

 Score =  486 bits (1251), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 224/289 (77%), Positives = 257/289 (88%), Gaps = 5/289 (1%)

Query: 8   EAMEVATETTQSIEQDYSWPLIRFDLPPRRIHHFYKQFRTSSNANNFLKGVKWSPDGSCF 67
           EA E+  E  Q +E++YSWP+IRFD+PP R +HF  QFRT SN NNFLKGVKWSPDGSCF
Sbjct: 20  EAEEIGNEAKQ-VEEEYSWPVIRFDVPPHRAYHFCHQFRTPSNPNNFLKGVKWSPDGSCF 78

Query: 68  LTSTEDNTLRLFSLPDDGSGSDSNACSINVDEDSYDASLVVNEGESVYDFCWYPYMTASE 127
           LTS+EDNTLRLFSLP++GS    +AC    DEDSY AS+VV+EGES++D CWYPYM+AS+
Sbjct: 79  LTSSEDNTLRLFSLPENGSDHHESAC----DEDSYAASIVVSEGESIHDHCWYPYMSASD 134

Query: 128 PVSCVFASTTRDHPIHLWDASSGLLRCTYRAYDAVDEITAAFSIAFNPAGTKIFAGYNKS 187
           PV+CVFASTTRDHPIHLWDA+SG LRCTYRAYDAVDEIT AFSIAFNPAGTKIFAGYNK 
Sbjct: 135 PVTCVFASTTRDHPIHLWDAASGELRCTYRAYDAVDEITTAFSIAFNPAGTKIFAGYNKC 194

Query: 188 VRVFDIHRPGRDFEQYSTLQGNKEGQTGIISAIAVSPTRSGMLATGSYSQTAAIFREDNM 247
           +RVFD+HRPGRDFEQYST++GNKEGQ+GII+AIA  PT +GMLATGSYS+T AI+REDNM
Sbjct: 195 LRVFDVHRPGRDFEQYSTIKGNKEGQSGIIAAIAFCPTHTGMLATGSYSRTTAIYREDNM 254

Query: 248 ELLYVLHGQEGGITHVQFSKDGNYLYTGGRKDPYILCWDLRKTVEVVYK 296
           ELLY+LHGQEGG+T+VQFSKDGN+LYTGGRKDPYILCWD+R TV  VYK
Sbjct: 255 ELLYILHGQEGGVTNVQFSKDGNFLYTGGRKDPYILCWDIRNTVNTVYK 303