Jatropha Genome Database

JcCA0296621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296621.20 + phase: 0 
         (414 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008882001 assembled CDS                                       554   e-158
GSVIVT01023936001 assembled CDS                                       173   1e-43
GSVIVT01023937001 assembled CDS                                       160   1e-39
GSVIVT01008279001 assembled CDS                                       149   3e-36
GSVIVT01019038001 assembled CDS                                        52   4e-07
GSVIVT01001811001 assembled CDS                                        48   9e-06

>GSVIVT01008882001 assembled CDS
          Length = 408

 Score =  554 bits (1427), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 277/386 (71%), Positives = 314/386 (81%)

Query: 26  IEPCSNNDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANSIDISYPDIENHILPSQY 85
           ++PCSN+DSCNA++GYTLYTDLKVSEVA+LFQ+DPIA+LTAN+IDISYPD+ENHILPSQ 
Sbjct: 20  MDPCSNSDSCNAMVGYTLYTDLKVSEVATLFQVDPIAILTANAIDISYPDVENHILPSQL 79

Query: 86  FLKIPITCSCVDGIRKSVSTHYKTRPSDTLASIADSIYSGLVSADQIKEANSIQDPSVLD 145
           FLKIPI CSCVDGIRKSV+T YKTRPSDTL+SIADSIY+GLVSADQ++EANSI DPSVLD
Sbjct: 80  FLKIPIYCSCVDGIRKSVTTRYKTRPSDTLSSIADSIYAGLVSADQLREANSISDPSVLD 139

Query: 146 VGQSLVVPLPCTCFNGTDNSLPAIYLSYVVLEIDTLVGIASRYSTTITDLMNVNAMGNPA 205
           VGQ+LVVPLPCTCFNGTDN LPA YLSYVV   DTL GIASRYSTTI+DLM VNAMG+PA
Sbjct: 140 VGQTLVVPLPCTCFNGTDNLLPATYLSYVVKVDDTLTGIASRYSTTISDLMTVNAMGSPA 199

Query: 206 IKAGDILAVPLPACASKFPRYAFDYGLIVPNGSYAITASHCVQCSCGPGNLDLYCMPASL 265
           IKAGDILAVPLPACAS FP+YA DYGL VPNGSYAITASHCVQCSCGPG+L+LYCMPASL
Sbjct: 200 IKAGDILAVPLPACASNFPKYASDYGLAVPNGSYAITASHCVQCSCGPGSLNLYCMPASL 259

Query: 266 AVSCSSMQCKNSNLMLGNVTWARSSAGCNVTSCSYGGYVNGSIVTTLSTSLQPRCPGPQE 325
           AVSCSSMQC+N+NLMLGNVT  +SSAGCNVTSCSYGG+VNG+I+ TL+TSLQPRCPG Q+
Sbjct: 260 AVSCSSMQCRNTNLMLGNVTMQKSSAGCNVTSCSYGGFVNGTIIATLTTSLQPRCPGIQQ 319

Query: 326 FPPLLAPPTTVNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASA 385
           FPPL+APP++V +                                            AS 
Sbjct: 320 FPPLIAPPSSVIRDSFYAPSPSPSQSDGAGTTIPSPSVVPSTGSIPGFAPANGPTGSASD 379

Query: 386 ACSLVNPLATSLIAVVLYLFADLMMS 411
           A SLVNPLA+  + + L LF  LM+S
Sbjct: 380 ASSLVNPLASFPVVIALCLFFKLMVS 405


>GSVIVT01023936001 assembled CDS
          Length = 367

 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 165/296 (55%), Gaps = 19/296 (6%)

Query: 29  CSNNDSCNALLGYTLYTDLKVSEVASLFQIDPI-ALLTANSIDISYPDIENHILPSQYFL 87
           CS+  +CNAL+GY       +S + +LF +     LL ANS+  S P   N  + ++  +
Sbjct: 19  CSSGPTCNALVGYVSPNTTTLSAIQTLFGVKNFRTLLGANSLPASTPT--NQSVAAKDKI 76

Query: 88  KIPITCSCVDGIRKSVSTH---YKTRPSDTLASIADSIYSGLVSADQIKEANSIQDPSVL 144
            IP  C C +G    +S H   Y  +  D L  IA  +++GLV+  +I+  N+I D +++
Sbjct: 77  VIPFRCRCSNGT--GISNHRPVYTVQKDDGLYHIAAEVFAGLVTYQEIQAVNNISDANLI 134

Query: 145 DVGQSLVVPLPCTCFNGTDNSLPAIYLSYVVLEIDTLVGIASRYSTTITDLMNVNAMGNP 204
           +VGQ L +PLPC+C     N    ++  +VV    ++  IA +Y TT   L+ +N + +P
Sbjct: 135 EVGQELWIPLPCSC--DEVNESKVVHYGHVVESGSSVAEIAEKYGTTEETLLELNNITDP 192

Query: 205 A-IKAGDILAVPLPACASKFPRYAFDYGLIVPNGSYAITASHCVQCSC-GPGNLDLYCMP 262
             +KAGD+L VPL AC S     + DY L++ NG+YA TA++CV+C C    N  L C  
Sbjct: 193 KNLKAGDVLDVPLKACTSVVKNTSLDYPLLLSNGTYAYTANNCVKCQCYSANNWTLQCEQ 252

Query: 263 ASLAV---SCSSMQCKNSNLMLGNVTWARSSAGCNVTSCSYGGYVNGSIVTTLSTS 315
           + L +   +C SM+C +S L +GN T    S  CN T+C+Y GY N +I T+L  S
Sbjct: 253 SGLNITNGTCPSMECGSSGLSIGNST----STTCNRTTCAYAGYTNQTIFTSLVES 304


>GSVIVT01023937001 assembled CDS
          Length = 357

 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 161/291 (55%), Gaps = 24/291 (8%)

Query: 34  SCNALLGYTLYTDLKVSEVASLFQIDPI-ALLTANSIDISYPDIENHILPSQYFLKIPIT 92
           +C+AL+ Y       +S + +LF +  +  LL ANS+  S     N  + ++  + IP  
Sbjct: 36  TCSALIDYVSPNTTTLSAIQTLFDVKNLRTLLGANSLPTSTS--PNQSVAAKDKIVIPFR 93

Query: 93  CSCVDGIRKSVSTH---YKTRPSDTLASIADSIYSGLVSADQIKEANSIQDPSVLDVGQS 149
           C C +G    +S H   Y  +  D L  IA  +++GLV+  +I+  N+I D ++++VGQ 
Sbjct: 94  CRCSNGT--GISNHRPVYTVQKDDGLYHIAAEVFAGLVTYQEIQAVNNISDANLIEVGQE 151

Query: 150 LVVPLPCTC--FNGTDNSLPAIYLSYVVLEIDTLVGIASRYSTTITDLMNVNAMGNPA-I 206
           L +PLPC+C   NG+      ++  +VV    ++  IA  Y TT   L+ +N + +P  +
Sbjct: 152 LWIPLPCSCDEVNGSK----VVHYGHVVEAGSSVELIAEEYGTTQETLLRLNGITDPKNL 207

Query: 207 KAGDILAVPLPACASKFP-RYAFDYGLIVPNGSYAITASHCVQCSC-GPGNLDLYCMPAS 264
           +AG +L VPL AC S      + DY L+V NG+Y  TA+ CV C C    N  L C P+ 
Sbjct: 208 QAGAVLDVPLKACTSMVANNNSLDYPLLVANGTYVYTANSCVMCKCDSANNWTLQCEPSQ 267

Query: 265 LAVS---CSSMQCKNSNLMLGNVTWARSSAGCNVTSCSYGGYVNGSIVTTL 312
           L +S   C SMQC+ S+L +GN T    SAGCN T+C+Y GY +  I+TTL
Sbjct: 268 LKLSNRTCPSMQCEGSSLYIGNST----SAGCNRTTCAYAGYTSQMILTTL 314


>GSVIVT01008279001 assembled CDS
          Length = 234

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 109/165 (66%), Gaps = 4/165 (2%)

Query: 171 LSYVVLEIDTLVGIASRYSTTITDLMNVNAMGNPAIKAGDILAVPLPACASKFPRYAFDY 230
           +SYVV   ++L  I +RY TT+TDL  VN +G P I  GDILA+P+PAC+S   R+ ++ 
Sbjct: 1   MSYVVQRGESLGSIGARYHTTVTDLAAVNGLGQPVINPGDILAIPIPACSSANLRW-YNE 59

Query: 231 GLIVPNGSYAITASHCVQCSCGPGNLDLYCMPASLAVSCSSMQCKNSNLMLGNVTWARSS 290
            LIV NGSYA+TA++C++CSC P +L+L C P+ + V+C+ +QCK S+L +G+V   ++ 
Sbjct: 60  SLIVANGSYALTANNCIRCSCTPTHLNLQCFPSGIMVACNRLQCKASHLFIGDVVVTKTP 119

Query: 291 AGCNVTSCSYGGYVNGSIVTTLSTSLQPRCPGPQ---EFPPLLAP 332
           AGCN+T+C Y G+    I  +L  S    C G +   E  P+ +P
Sbjct: 120 AGCNITTCVYRGHGGRKIFRSLVNSSHVNCSGNESYWETSPMASP 164


>GSVIVT01019038001 assembled CDS
          Length = 1305

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 16/191 (8%)

Query: 32  NDSCNALLGYTL---YTDLKVSEVASLFQIDPIALLTANSIDISYPDIENHILPSQYFLK 88
           N SC A L +     Y D  VS ++ L   DP  L   NS+D      E     ++  + 
Sbjct: 72  NASCQAFLIFRSEPPYND--VSSISDLLGSDPSQLAQINSVD------ETATFETKKEVI 123

Query: 89  IPITCSCVDGIRKSVSTHYKTRPSDTLASIADSIYSGLVSADQIKEANSIQDPSVLDVGQ 148
           +P+ CSC  G     +T Y  +  DT   IA++ + GL +   ++   +    ++   G 
Sbjct: 124 VPVNCSC-SGEFSQANTSYVVQHGDTYLLIANNTFEGLSTCQALRSQRTSLTTNIY-TGT 181

Query: 149 SLVVPLPCTCFNGTDNSLPAIYL-SYVVLEIDTLVGIASRYSTTITDLMNVNAMG--NPA 205
            L VPL C C     + +   YL SY+V   D +  I+ R+       +  N +   NP 
Sbjct: 182 KLTVPLRCACPTKNQSDVGVKYLMSYLVASGDYVSSISVRFGVDTGMTLEANELSEQNPN 241

Query: 206 IKAGDILAVPL 216
           I     L +PL
Sbjct: 242 IYPFTTLLIPL 252


>GSVIVT01001811001 assembled CDS
          Length = 672

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 77  ENHILPSQYFLKIPITCSCVDGIRKSVSTHYKTRPSDTLASIADSIYSGLVSADQIKEAN 136
           +  +LP    L IPI C C  G  ++  T   T   ++   IA+S+  GL +   I+E N
Sbjct: 90  DTELLPYNLPLLIPIECKCKAGFFQAELTK-TTIEGESFFGIAESL-EGLTTCKAIRERN 147

Query: 137 SIQDPSVLDVGQSLVVPLPCTCFNGTD-NSLPAIYLSYVVLEIDTLVGIASRYSTTITDL 195
               P  L     L++PL C C + ++      + LSY V E DT+  +A +++TT   +
Sbjct: 148 PSIQPWGLADKVRLLIPLRCACPSSSELIQETKLLLSYPVSEGDTVPSLAFKFNTTSEAI 207

Query: 196 MNVNAMGNPAIKAGDI 211
           ++ N      ++ G +
Sbjct: 208 ISANNRSGATLRLGSL 223