Jatropha Genome Database

JcCA0296331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296331.10 + phase: 0 /partial
         (197 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021446001 assembled CDS                                       353   3e-98
GSVIVT01029601001 assembled CDS                                       145   1e-35
GSVIVT01029623001 assembled CDS                                       144   2e-35
GSVIVT01029306001 assembled CDS                                       132   1e-31
GSVIVT01007818001 assembled CDS                                        83   7e-17
GSVIVT01018097001 assembled CDS                                        67   5e-12
GSVIVT01029609001 assembled CDS                                        64   4e-11

>GSVIVT01021446001 assembled CDS
          Length = 448

 Score =  353 bits (906), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 167/196 (85%), Positives = 182/196 (92%)

Query: 1   VCFLPGTLALGATKGITKEKAMKANLLKFEDLENLKLAEDLAKTCFEMYSVTSTGLAPEI 60
           VCFLPGTLALGATKGITKEKAMK NLL FEDLENLKLAEDLAKTCFEMYSVTSTGLAPEI
Sbjct: 248 VCFLPGTLALGATKGITKEKAMKDNLLTFEDLENLKLAEDLAKTCFEMYSVTSTGLAPEI 307

Query: 61  AYFHTKEYSEAGLNGGNKSSKFXXXXXXKHADRHNLLRPETVESLFVLYRITQDPKYREW 120
           AYFHT++Y E GL+GGNKSS++      K+ADRHNLLRPETVESLFVLYRIT++PKYREW
Sbjct: 308 AYFHTEDYFEQGLDGGNKSSEYMNDIIIKYADRHNLLRPETVESLFVLYRITENPKYREW 367

Query: 121 GWQIFEAFEKYTKVESAGYSSLEDVTMLPPRRRDKMETFYLGETLKYLYLLFGDTNIIPL 180
           GWQIFEAFEK+TKV+S GYSSL+DVT LPP+RRDKMETF+LGETLKYLYLLF D+ +IPL
Sbjct: 368 GWQIFEAFEKHTKVDSGGYSSLDDVTRLPPQRRDKMETFFLGETLKYLYLLFADSTVIPL 427

Query: 181 DKFVFNTEAHPFPIKG 196
           DKFVFNTEAHPFPIKG
Sbjct: 428 DKFVFNTEAHPFPIKG 443


>GSVIVT01029601001 assembled CDS
          Length = 575

 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 113/194 (58%), Gaps = 33/194 (17%)

Query: 1   VCFLPGTLALGATKGITKEKAMKANLLKFEDLENLKLAEDLAKTCFEMYSVTSTGLAPEI 60
            CF PG +ALG+  G   E++ K           L LAE+LA TC+  Y  T T LA E 
Sbjct: 381 ACFAPGMIALGSL-GYGPEESQKF----------LSLAEELAWTCYNFYQSTPTKLAGEN 429

Query: 61  AYFHTKEYSEAGLNGGNKSSKFXXXXXXKHADRHNLLRPETVESLFVLYRITQDPKYREW 120
            +FH+ +    G +                    N+LRPETVESLF L+R+T +  Y+EW
Sbjct: 430 YFFHSGQDMSVGTS-------------------WNILRPETVESLFYLWRLTGNKTYQEW 470

Query: 121 GWQIFEAFEKYTKVESAGYSSLEDVTMLPPRRRDKMETFYLGETLKYLYLLFGDTNIIPL 180
           GW IF+AFEK +++ES GY  L+DV      + + M++F+L ETLKYLYLLF  + +I L
Sbjct: 471 GWNIFQAFEKNSRIES-GYVGLKDVN--SGVKDNMMQSFFLAETLKYLYLLFSPSTVISL 527

Query: 181 DKFVFNTEAHPFPI 194
           D++VFNTEAHP  I
Sbjct: 528 DEWVFNTEAHPIRI 541


>GSVIVT01029623001 assembled CDS
          Length = 343

 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 113/194 (58%), Gaps = 33/194 (17%)

Query: 1   VCFLPGTLALGATKGITKEKAMKANLLKFEDLENLKLAEDLAKTCFEMYSVTSTGLAPEI 60
            CF PG +ALG+  G   E++ K           L LAE+LA TC+  Y  T T LA E 
Sbjct: 156 ACFAPGMIALGSL-GYGPEESQKF----------LSLAEELAWTCYNFYQSTPTKLAGEN 204

Query: 61  AYFHTKEYSEAGLNGGNKSSKFXXXXXXKHADRHNLLRPETVESLFVLYRITQDPKYREW 120
            +FH+ +    G +                    N+LRPETVESLF L+R+T    Y+EW
Sbjct: 205 YFFHSGQDMSVGTS-------------------WNILRPETVESLFYLWRLTGSKTYQEW 245

Query: 121 GWQIFEAFEKYTKVESAGYSSLEDVTMLPPRRRDKMETFYLGETLKYLYLLFGDTNIIPL 180
           GW IF+AFEK +++ES GY  L+DV      + + M++F+L ETLKYLYLLF  +++I L
Sbjct: 246 GWNIFQAFEKNSRIES-GYVGLKDVNR--DVKDNMMQSFFLAETLKYLYLLFSPSSVISL 302

Query: 181 DKFVFNTEAHPFPI 194
           D++VFNTEAHP  I
Sbjct: 303 DEWVFNTEAHPIGI 316


>GSVIVT01029306001 assembled CDS
          Length = 597

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 111/194 (57%), Gaps = 33/194 (17%)

Query: 1   VCFLPGTLALGATKGITKEKAMKANLLKFEDLENLKLAEDLAKTCFEMYSVTSTGLAPEI 60
            CF PG LAL A+      +A K           L LAE+LA TC+  Y  T   LA E 
Sbjct: 408 ACFAPGMLAL-ASYDYGPGEAEKY----------LSLAEELAWTCYNFYQSTPMKLAGEN 456

Query: 61  AYFHTKEYSEAGLNGGNKSSKFXXXXXXKHADRHNLLRPETVESLFVLYRITQDPKYREW 120
            +F       AG +    +S              N+LRPET+ESLF L+RIT +  Y+EW
Sbjct: 457 YFF------SAGQDMSVDTS-------------WNILRPETIESLFYLWRITGNKTYQEW 497

Query: 121 GWQIFEAFEKYTKVESAGYSSLEDVTMLPPRRRDKMETFYLGETLKYLYLLFGDTNIIPL 180
           GW IF+AFEK +++E+ GY   ++V      + + M++F+L ETLKYLYLLF   ++IPL
Sbjct: 498 GWNIFQAFEKNSRIET-GYVGHKNVNT--GIKDNMMQSFFLAETLKYLYLLFSPPSVIPL 554

Query: 181 DKFVFNTEAHPFPI 194
           D++VFNTEAHPF I
Sbjct: 555 DEWVFNTEAHPFRI 568


>GSVIVT01007818001 assembled CDS
          Length = 573

 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 4/98 (4%)

Query: 97  LRPETVESLFVLYRITQDPKYREWGWQIFEAFEKYTKVESAGYSSLEDVTMLPPRRRDKM 156
           LRPE  ES F LY+ T+DP Y E G  + ++   Y KVE  G++S++DVT +  +  D  
Sbjct: 383 LRPELAESTFYLYQATKDPWYIEVGKSMVDSLNLYAKVE-GGFASIKDVTTM--QLEDHQ 439

Query: 157 ETFYLGETLKYLYLLFGDTNIIPLDKFVFNTEAHPFPI 194
            +F+L ET KYLYLLF D+ ++  + +VF TE HP P+
Sbjct: 440 HSFFLAETCKYLYLLFDDSFLVDRN-YVFTTEGHPLPV 476


>GSVIVT01018097001 assembled CDS
          Length = 643

 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 9/111 (8%)

Query: 89  KHADRHNLLRPETVESLFVLYRITQDPKYREWGWQIFEAFEKYTKVESAGYSSLEDVTML 148
           +H  +   LRPE +ES + LY+ T++P+Y + G  +  + + Y      GY  + DV   
Sbjct: 396 QHGQKSYPLRPELMESTYWLYKATRNPRYLDAGRDMVTSLQ-YGARCPCGYCHISDVEF- 453

Query: 149 PPRRRDKMETFYLGETLKYLYLLF----GDTNIIPLD--KFVFNTEAHPFP 193
             ++ D ME+F+L ET+KYL+LLF    G  N++     K++F+TE H  P
Sbjct: 454 -HKQEDHMESFFLAETVKYLWLLFDLAAGSDNLVENGPYKYIFSTEGHLLP 503


>GSVIVT01029609001 assembled CDS
          Length = 267

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 19/90 (21%)

Query: 41  LAKTCFEMYSVTSTGLAPEIAYFHTKEYSEAGLNGGNKSSKFXXXXXXKHADRHNLLRPE 100
           LA TC+  Y  T T LA E  +FH+ +    G +                    N+LRPE
Sbjct: 194 LAWTCYNFYQSTPTKLARENYFFHSGQDMSVGTSW-------------------NILRPE 234

Query: 101 TVESLFVLYRITQDPKYREWGWQIFEAFEK 130
           TVESLF L+R+T +  Y+EWGW IF   ++
Sbjct: 235 TVESLFYLWRLTGNKTYQEWGWNIFHHLKR 264