Jatropha Genome Database

JcCA0296141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296141.20 - phase: 2 /TE
         (570 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037631001 assembled CDS                                       187   8e-48
GSVIVT01034745001 assembled CDS                                       181   8e-46
GSVIVT01015124001 assembled CDS                                       157   1e-38
GSVIVT01038695001 assembled CDS                                       148   7e-36
GSVIVT01011363001 assembled CDS                                       128   9e-30
GSVIVT01028612001 assembled CDS                                        94   2e-19
GSVIVT01036343001 assembled CDS                                        52   7e-07

>GSVIVT01037631001 assembled CDS
          Length = 1940

 Score =  187 bits (476), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/214 (44%), Positives = 139/214 (64%), Gaps = 15/214 (7%)

Query: 70   CLHSSVSDIIFTSIMTYETAKEIWDSLKNEYQSNEQTKLMQVLNLKREFEMQKMKTSGGV 129
            CL ++VS  IF  IM  ++A EIW+ LK EY+ +E+ K MQV+NL REFEM+KM+ S  V
Sbjct: 791  CLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDAV 850

Query: 130  KEYVNNFMSIVNKIRLLGEEFPERRVVEKILISLSEKFESKISSLEHTKNLSEISVGELT 189
            K+Y    +SI +K+RLLG+EF   ++V+KIL++L EK+E+ ISSLE++K+LS IS+ EL 
Sbjct: 851  KDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKDLSTISLTELL 910

Query: 190  NALQAVEQRRAFREDNTIEAAFVAK------------TTNKFLSKRRK---FPLCGICKK 234
            ++L+AVEQRR  R+ +T E AF A+              NK     +K   FP C  CKK
Sbjct: 911  HSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKVNNNKSCGNNQKNGVFPPCPHCKK 970

Query: 235  DNHNENDCWHKGKLQCFNCKKFGHIQKDCRYKNQ 268
             NH+   CW +  ++C  C K GH+++ C+ + Q
Sbjct: 971  TNHSPKKCWWRPDVKCNKCGKQGHVERICKNQQQ 1004


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score =  181 bits (459), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 130/216 (60%), Gaps = 21/216 (9%)

Query: 70  CLHSSVSDIIFTSIMTYETAKEIWDSLKNEYQSNEQTKLMQVLNLKREFEMQKMKTSGGV 129
           CLHS ++D IFT IM  ET K +WD L+ E++ +E+ K +++L LKREFE+ KMK    V
Sbjct: 73  CLHSGLTDHIFTKIMNLETPKLVWDKLQGEFEGSERFKTVRLLKLKREFELMKMKDDEFV 132

Query: 130 KEYVNNFMSIVNKIRLLGEEFPERRVVEKILISLSEKFESKISSLEHTKNLSEISVGELT 189
           K+Y    M +VN+IRLLGE F +++VVEKI++ + +KFE+KIS++E + +L  +++ ELT
Sbjct: 133 KDYSGRLMDVVNQIRLLGEAFTDQKVVEKIMVLVPQKFEAKISAIEESCDLQTLTIVELT 192

Query: 190 NALQAVEQRRAFREDNTIEAAFVAKTTNK-------------------FLSKRRKFPLCG 230
           + L A EQR   R D   E AF A    K                     S++ KFP C 
Sbjct: 193 SKLHAQEQRVLMRGDEATEGAFQANHEGKNSGNLQGKKFFKNNKEKAEGSSRKGKFPSCS 252

Query: 231 ICKKDNHNENDCWHKGK--LQCFNCKKFGHIQKDCR 264
            C++ NH E DCWHKGK    C  C K GH +K CR
Sbjct: 253 HCRRTNHAEKDCWHKGKPLFNCNFCNKLGHSEKYCR 288


>GSVIVT01015124001 assembled CDS
          Length = 780

 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 105/139 (75%)

Query: 70  CLHSSVSDIIFTSIMTYETAKEIWDSLKNEYQSNEQTKLMQVLNLKREFEMQKMKTSGGV 129
            L + VS  IFT IMT +T  EIW+ LK EY+ NE+ K MQVLNL REFEMQ+MK S  +
Sbjct: 74  SLFAVVSSTIFTRIMTLKTTNEIWNFLKKEYEGNERVKGMQVLNLIREFEMQRMKESETI 133

Query: 130 KEYVNNFMSIVNKIRLLGEEFPERRVVEKILISLSEKFESKISSLEHTKNLSEISVGELT 189
           K+Y +  +SIVNK+RLLG +F   R+V+KI I++SEKFE+ ISSLE++K++S I++ EL 
Sbjct: 134 KDYSDKLLSIVNKVRLLGVDFSNSRIVQKIFITVSEKFENTISSLENSKDVSSITLAELL 193

Query: 190 NALQAVEQRRAFREDNTIE 208
           NALQA EQRR  R++ ++E
Sbjct: 194 NALQAQEQRRLMRQEGSVE 212


>GSVIVT01038695001 assembled CDS
          Length = 740

 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 118/193 (61%), Gaps = 20/193 (10%)

Query: 109 MQVLNLKREFEMQKMKTSGGVKEYVNNFMSIVNKIRLLGEEFPERRVVEKILISLSEKFE 168
           MQV+NL REFEM+KM+ S  VK+Y    +SI +K+RLLG+EF   ++V+KIL++L EK+E
Sbjct: 1   MQVMNLIREFEMKKMRESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYE 60

Query: 169 SKISSLEHTKNLSEISVGELTNALQAVEQRRAFREDNTIEAAFVAKTTNKFLSKRRK--- 225
           + ISSLE++K+LS IS+ EL ++L+AVEQRR  R+ +T E AF A+       K  K   
Sbjct: 61  AIISSLENSKDLSTISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKVNN 120

Query: 226 ------------FPLCGICKKDNHNENDCWHKGKLQCFNCKKFGHIQKDCRYKNQSNFVX 273
                       FP C  CKK NH+   CW +  ++C  C K G++++ C+ + Q     
Sbjct: 121 KKSCGNNQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGNMERICKNQQQ----- 175

Query: 274 EEGTLLXVFVQEE 286
           EE +    + QEE
Sbjct: 176 EETSAAVDYCQEE 188


>GSVIVT01011363001 assembled CDS
          Length = 1752

 Score =  128 bits (321), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 58/111 (52%), Positives = 84/111 (75%)

Query: 70  CLHSSVSDIIFTSIMTYETAKEIWDSLKNEYQSNEQTKLMQVLNLKREFEMQKMKTSGGV 129
           CL ++VS  IF  IM  ++A EIW+ LK EY+ +E+ K MQV+NL REFEM+KM+ S  V
Sbjct: 72  CLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDAV 131

Query: 130 KEYVNNFMSIVNKIRLLGEEFPERRVVEKILISLSEKFESKISSLEHTKNL 180
           K+Y    +SI +K+RLLG+EF   ++V+KIL++L EK+E+ ISSLE++K+L
Sbjct: 132 KDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKDL 182


>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 3/193 (1%)

Query: 79  IFTSIMTYETAKEIWDSLKNEYQSNEQTKLMQVLNLKREFEMQKMKTSGGVKEYVNNFMS 138
           I  +I+  +T K+IWDS+K ++Q   + K   +  L++EF++  MK+   V EY +  ++
Sbjct: 106 ILETILNKKTTKDIWDSMKQKFQGTTRVKRGNLQALRKEFKILHMKSGETVNEYFSRTLA 165

Query: 139 IVNKIRLLGEEFPERRVVEKILISLSEKFESKISSLEHTKNLSEISVGELTNALQAVEQR 198
           I NK+++ GE+     VVEKIL S++ KF+  + S+E +K+L  +++ EL ++L   EQR
Sbjct: 166 IANKMKVNGEDKGNTAVVEKILRSMTSKFDYVVCSIEESKDLDTLTIDELQSSLLVHEQR 225

Query: 199 RAFREDNTIEAAFVAKTTNKFLSKRRKFPLCGICKKDNHNENDCWHKGKLQCFNCKKFGH 258
                 + +E     K T+   S  R         +        + K  ++C+NC K GH
Sbjct: 226 MT---SHVLEEEQALKVTHGDHSGSRGRGHGNYRGRGRGRNRRFFDKATMECYNCHKLGH 282

Query: 259 IQKDCRYKNQSNF 271
              +C ++    +
Sbjct: 283 FAWECPHRETGAY 295


>GSVIVT01036343001 assembled CDS
          Length = 1201

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 32/227 (14%)

Query: 71  LHSSVSDIIFTSIMTYETAKEIWDSLKNEYQSNEQTKLMQVLNLKREFEMQKMKTSGGVK 130
           ++SS++  +   I+  +T+ E W +L+  + ++ + + MQ   L+  F+  K K S  + 
Sbjct: 192 IYSSLTPDVMGQIVGLQTSHEAWTALQRSFSASTKARTMQ---LRLAFQTNK-KGSLTMM 247

Query: 131 EYVNNFMSIVNKIRLLGEEFPERRVVEKILISLSEKFESKISSLEHTKNLSEISVGELTN 190
           EY+     I + +  +GE  PE+  + ++L  L  ++   I+SL  T    +I +  + +
Sbjct: 248 EYIQKLKHISDSLAAIGEPVPEKDQILQLLSGLGAEYNPIIASL--TTRDDDIQLHAVHS 305

Query: 191 ALQAVEQRRAFREDNTIEAAFVAK--TTNKFLSKRRKFPLCG--------ICKKDN-HNE 239
            L   EQR   +   T E   +A   T N+    + K P  G          + D   + 
Sbjct: 306 ILLTHEQRLPLQTTPTEEDLLIANFATHNRPRRSQSKKPSQGKPPQSFMPTIRPDTLLDS 365

Query: 240 NDCWHKG---------------KLQCFNCKKFGHIQKDCRYKNQSNF 271
              + +G               + QC  C KFGH+   C ++   N+
Sbjct: 366 RQQYPQGYRPNRFNNNRSRTNNRPQCQLCGKFGHMVLSCYHRFDVNY 412