Jatropha Genome Database

JcCA0295991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0295991.10 - phase: 0 /partial
         (165 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011478001 assembled CDS                                       159   5e-40
GSVIVT01010091001 assembled CDS                                       119   6e-28
GSVIVT01035962001 assembled CDS                                        65   2e-11

>GSVIVT01011478001 assembled CDS
          Length = 320

 Score =  159 bits (402), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 95/142 (66%), Gaps = 3/142 (2%)

Query: 1   MEATXXXXXXXXXXXXHVSDFQSTSCFFVPKTRGNLSTLRPFSTSFANRRILSVEASASS 60
           MEA               S     S +F  KT    S   P   S  NR I S+  S + 
Sbjct: 1   MEAKLLKAASPSVILPQGSKISKPSSYFTSKTNHCSSCRFP---SLKNRVIQSIHVSPTP 57

Query: 61  IGLEKKKRVDESENLTLEHIRRSLIRQEDSIIFSLLERSQYCYNADTYDPDAFSMDGFHG 120
           +  E+KKRVDES+NLTL+ IR SLIRQEDSIIFSLLER+QYCYNA+TYDPDA SMDGFHG
Sbjct: 58  LRFERKKRVDESQNLTLDAIRNSLIRQEDSIIFSLLERAQYCYNAETYDPDALSMDGFHG 117

Query: 121 SLVEYMLREIEKLHAQVGRYKS 142
           SLVE+M+RE EKLHAQVGRYKS
Sbjct: 118 SLVEFMVRETEKLHAQVGRYKS 139


>GSVIVT01010091001 assembled CDS
          Length = 273

 Score =  119 bits (298), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 66/77 (85%)

Query: 66  KKRVDESENLTLEHIRRSLIRQEDSIIFSLLERSQYCYNADTYDPDAFSMDGFHGSLVEY 125
           K+RVD SE+ TL+ IR  LIRQEDSIIFSLLER+QY YNADTYD  AFS DGFHGSLVE+
Sbjct: 16  KERVDASESYTLDSIRHFLIRQEDSIIFSLLERAQYYYNADTYDHHAFSKDGFHGSLVEF 75

Query: 126 MLREIEKLHAQVGRYKS 142
           M++E EKLHAQ+GRY S
Sbjct: 76  MIKETEKLHAQMGRYDS 92


>GSVIVT01035962001 assembled CDS
          Length = 248

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 75  LTLEHIRRSLIRQEDSIIFSLLERSQYCYNADTYDPDAFSMDGFHG-SLVEYMLREIEKL 133
           + LE +R SLIRQED+I+FSL+ER+++  N+  Y P    +D F   S +   +RE E L
Sbjct: 1   MDLESVRDSLIRQEDTIVFSLIERAKFPINSWAYSPPQNGVDAFSASSFLHSFVRESEAL 60

Query: 134 HAQVGRYKS 142
           HA+ GRY++
Sbjct: 61  HAKAGRYEN 69