Jatropha Genome Database

JcCA0294301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294301.10 - phase: 0 /partial
         (243 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036786001 assembled CDS                                       421   e-118

>GSVIVT01036786001 assembled CDS
          Length = 380

 Score =  421 bits (1081), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 195/240 (81%), Positives = 221/240 (92%)

Query: 1   KRPFHVQADPLYTSHRTSGWVSRVMASSVVGTKANFSTQSLSTNEPVVSVDWLHANLREP 60
           KRPF+ + + +Y  +R+SG+ +  MASS  GT+++FSTQS+S NEPVVSVDWLHAN+REP
Sbjct: 35  KRPFYSRPNAVYLVYRSSGFSTCAMASSTSGTRSSFSTQSVSPNEPVVSVDWLHANIREP 94

Query: 61  DMKVLDASWYMPDEQRNPFQEYQVAHIPGAVFFDVDGIADRATNLPHMLPSEEAFAAAVS 120
           D+KVLDASWYMPDEQRNP QEYQVAHIPGA+FFDVDGI+D+ TNLPHMLPSEEAFAAAVS
Sbjct: 95  DLKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDQTTNLPHMLPSEEAFAAAVS 154

Query: 121 ALGIENKDGLVVYDGKGIFSAARVWWMFRVFGHDKVWVLDGGLPRWRASGYDVESSASGD 180
           ALGIENKDG+VVYDGKGIFSAARVWWMFRVFGH+++WVLDGGLP WRASG+DVESSASGD
Sbjct: 155 ALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHERIWVLDGGLPTWRASGFDVESSASGD 214

Query: 181 TILKASAASEAIEKVYQGQTVGPITFQTKFQPHLVWTLEQVKKNIEDKMHQHIDARSKAR 240
            ILKASAASEAIEKVY+ Q VGPITFQT+FQPHLVWTLEQV +NIE+K HQHIDARSKAR
Sbjct: 215 AILKASAASEAIEKVYRRQAVGPITFQTRFQPHLVWTLEQVNQNIENKTHQHIDARSKAR 274