Jatropha Genome Database

JcCA0294271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294271.10 + phase: 1 /pseudo/partial
         (229 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01006634001 assembled CDS                                       126   8e-30
GSVIVT01009070001 assembled CDS                                       120   5e-28
GSVIVT01004278001 assembled CDS                                       110   7e-25

>GSVIVT01006634001 assembled CDS
          Length = 369

 Score =  126 bits (317), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 62/63 (98%)

Query: 167 MGAVLMFGGQMPVIKVGRMAGQFAKPRSEPFEEKNGVKLPSYRGDNINGDAVNEKSRVPD 226
           MGAVLMFGGQ+PVIKVGRMAGQFAKPRS+PFEEKNGVKLPSY+GDNINGDA NEKSR+PD
Sbjct: 1   MGAVLMFGGQVPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYKGDNINGDAFNEKSRIPD 60

Query: 227 PER 229
           P+R
Sbjct: 61  PQR 63


>GSVIVT01009070001 assembled CDS
          Length = 370

 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/63 (87%), Positives = 59/63 (93%)

Query: 167 MGAVLMFGGQMPVIKVGRMAGQFAKPRSEPFEEKNGVKLPSYRGDNINGDAVNEKSRVPD 226
           MGAVLMFGGQ+PVIKVGRMAGQFAKPRSE FEEKNGVKLPSYRGDN+NGDA + KSR PD
Sbjct: 1   MGAVLMFGGQVPVIKVGRMAGQFAKPRSESFEEKNGVKLPSYRGDNVNGDAFDVKSRTPD 60

Query: 227 PER 229
           P+R
Sbjct: 61  PQR 63


>GSVIVT01004278001 assembled CDS
          Length = 368

 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 55/63 (87%)

Query: 167 MGAVLMFGGQMPVIKVGRMAGQFAKPRSEPFEEKNGVKLPSYRGDNINGDAVNEKSRVPD 226
           MG VL FG Q+PVIKVGRMAGQFAKPRS+PFE K+GVKLPSYRGDNIN D  +EKSR PD
Sbjct: 1   MGIVLTFGAQLPVIKVGRMAGQFAKPRSDPFEVKDGVKLPSYRGDNINSDDFDEKSRTPD 60

Query: 227 PER 229
           P+R
Sbjct: 61  PQR 63