Jatropha Genome Database

JcCA0294231.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294231.20 - phase: 1 /partial
         (259 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009087001 assembled CDS                                       122   2e-28
GSVIVT01035168001 assembled CDS                                       112   3e-25

>GSVIVT01009087001 assembled CDS
          Length = 775

 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 124/265 (46%), Gaps = 29/265 (10%)

Query: 7   RLCGSGDIFSSGTRSRLFLFNFIARNSGLPLVDLVSFSS-----------DELASELCWN 55
           R+ GS D++    R      NF+  + G  L DLVS++S           D       WN
Sbjct: 523 RVAGSSDLYKVNKRKPYHSVNFVIAHDGFTLYDLVSYNSKHNNANGEGGKDGTNDNFSWN 582

Query: 56  CGEEGPTNKIPVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSS-GGSISYGDR---K 111
           CG EG T    +   R +Q++N+   L  S G P++ MGDE G +  G + SYG      
Sbjct: 583 CGFEGETADAKIKALRSRQMKNFHLALMCSQGTPMMLMGDEYGHTRYGNNNSYGHDTAIN 642

Query: 112 PFDWNSLSTGFGIQMTQFISFLSSLR-TRWSDVLQKRNFLKEENIDWYGTDQSPPRWEDP 170
            F W  L +    +  +F  F   ++  R   V  + NFL+++++ W+  +     W++ 
Sbjct: 643 HFLWGQLDSR---KRDRFRFFKEVIKFRRMHHVFGRENFLEKKDVTWHEDN-----WDNY 694

Query: 171 SCKFLAMTLRTKSSGNLFMAFNAADQSESVILPQLPEGMTWLRLVDTALPFPGFFSNDGE 230
             KFLA TL   + G++++AFN  D    V +P  P    W R+VDT L  P  F ++G 
Sbjct: 695 ESKFLAFTLHANNGGDIYLAFNTHDFFVKVAIPSPPANRRWFRVVDTNLESPKDFVSEGV 754

Query: 231 PVVEQMAELIVYGMKSHSCILFEAR 255
           P +        Y +  +S IL EA+
Sbjct: 755 PGIGS-----AYNVAPYSSILLEAK 774


>GSVIVT01035168001 assembled CDS
          Length = 809

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 123/271 (45%), Gaps = 34/271 (12%)

Query: 8   LCGSGDIFSSGTRSRLFLFNFIARNSGLPLVDLVSFS-----------SDELASELCWNC 56
           LCGS +++  G R      NF+  + G  L DLV+++           +D       WNC
Sbjct: 538 LCGSPNLYQEGGRKPWNSINFVCAHDGFTLADLVTYNKKHNNANGEDNNDGENHNNSWNC 597

Query: 57  GEEGPTNKIPVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSSGGS----ISYGDRKP 112
           G+EG    I V + R +Q+RN+   L VS GVP++ MGDE G + GG+            
Sbjct: 598 GQEGEFASISVKKLRKRQMRNFFLCLMVSQGVPMIYMGDEYGHTKGGNNNTYCQDNYMNY 657

Query: 113 FDWN----SLSTGFGIQMTQFISFLSSLRTRWSDVLQKRNFLKEENIDWYGTDQSPPRWE 168
           F W+    SLS  F     +F   +S  R    + L   +F   E + W+G     P W 
Sbjct: 658 FRWDKKEESLSDFF-----RFCCLMSKFRQE-CESLGLNDFPTAERLQWHGRTPGMPDWS 711

Query: 169 DPSCKFLAMTLRTKSSGNLFMAFNAADQSESVILPQLPEGMTWLRLVDTALPFP-GFFSN 227
             S +F+A T+     G +++AFN +     + LP+ P G  W  LVDT+ P P  F SN
Sbjct: 712 KTS-RFVAFTMVDSVKGEIYVAFNTSHLPIIITLPERP-GYRWQPLVDTSKPAPFDFLSN 769

Query: 228 D------GEPVVEQMAELIVYGMKSHSCILF 252
           D            Q  E  +Y M S+S I+ 
Sbjct: 770 DVPERDTAVKQYSQFTEANLYPMLSYSSIIL 800