Jatropha Genome Database

JcCA0294231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294231.10 + phase: 0 
         (257 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011095001 assembled CDS                                       358   2e-99

>GSVIVT01011095001 assembled CDS
          Length = 315

 Score =  358 bits (918), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 185/254 (72%), Positives = 199/254 (78%)

Query: 4   KTLFVHEWQAEQRKKSKXXXXXXXXXXXXXXXXXXXXXXXGLRLKGYPEEDVKKARKLVS 63
           K  +  EWQA QR+K+K                       GLRLKGYPEE+VKKA+KLVS
Sbjct: 62  KEYYDDEWQARQREKTKELHRRRQEEEEEEERKVEEYREIGLRLKGYPEEEVKKAKKLVS 121

Query: 64  SFIRXXXXXXXXXXXXXXXXXLNELVLMVIWNRLDLARRDDEKDAVRSLDLLYRRVEMEI 123
           SFIR                 L ELVLMVIWNRLDLARRDDEKDAVRSLDLLYRRVE EI
Sbjct: 122 SFIRSAEEVEEKIEEAAEKGELTELVLMVIWNRLDLARRDDEKDAVRSLDLLYRRVETEI 181

Query: 124 LKREATPAMRLLNDLLNMHDGFDDEGWLKECKKCMIDTFPREDPFSILVPAGFDIDKHQG 183
           LKREA+PAMRLLNDLLNMHDGFDDEGWLK+CKKCMIDTFPREDPFSILVPAGF+ID+HQG
Sbjct: 182 LKREASPAMRLLNDLLNMHDGFDDEGWLKKCKKCMIDTFPREDPFSILVPAGFNIDEHQG 241

Query: 184 PLQPPLEADDVLLRVDFVREVDALLQEVRHEPSEEQNIEGFDPESVASKLKQQEKQRTIR 243
            L+PPLE DD LLRVDFVREVDALLQEVR E SE QN +G DPESVAS+LKQQEKQ+TIR
Sbjct: 242 KLRPPLEVDDPLLRVDFVREVDALLQEVRPEQSEAQNAQGLDPESVASRLKQQEKQQTIR 301

Query: 244 KVEALLDLAINLKW 257
           +VEALLDLAINLKW
Sbjct: 302 QVEALLDLAINLKW 315