Jatropha Genome Database

JcCA0294151.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294151.20 - phase: 2 /partial
         (64 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037466001 assembled CDS                                        87   1e-18

>GSVIVT01037466001 assembled CDS
          Length = 377

 Score = 87.0 bits (214), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 48/62 (77%)

Query: 2   EVGIQELPKNSALGRLRGSDNVLEIYSRCYNEQPLVIQXXXXXXXXXXXXVLADILDIQD 61
           EVG++ELPK+S LGRLRGS+N+L IYSRCYNEQPLVI+            VLADILDIQD
Sbjct: 315 EVGLRELPKDSPLGRLRGSNNILAIYSRCYNEQPLVIEGAGAGNDTTAAGVLADILDIQD 374

Query: 62  LF 63
           LF
Sbjct: 375 LF 376