Jatropha Genome Database

JcCA0293801.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293801.20 + phase: 0 
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007676001 assembled CDS                                       127   3e-30
GSVIVT01004087001 assembled CDS                                        57   3e-09

>GSVIVT01007676001 assembled CDS
          Length = 268

 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 88/117 (75%), Gaps = 8/117 (6%)

Query: 17  PVKELWQIHYSRFFSFPRLSSTCAILKPL-SSRCIKKNPHGLHGKWVSSSSMASLHLKND 75
           P++  W+I YSRFF++P +SST  IL+PL +++ I+      HG WVSS + ASLHL + 
Sbjct: 19  PIRYYWEIQYSRFFNYPCISSTSPILRPLPTTKRIRT-----HGTWVSSPT-ASLHLLSH 72

Query: 76  YADARGFVLVVSFQGKVYEEHHIAKLNFSWPQVSCLDECPIRGSRVVFASYRDSLGQ 132
           +  A   VLV+S Q K++EEH I+KL+FSWPQVSC++ECP+RGSRV+FASY D +GQ
Sbjct: 73  HFSAE-LVLVISLQEKIHEEHFISKLHFSWPQVSCVNECPVRGSRVIFASYSDCVGQ 128


>GSVIVT01004087001 assembled CDS
          Length = 282

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 17/119 (14%)

Query: 15  LEPVKELWQIHYSRFFSFPRLSSTCAILKPLSSRCIKKNPHGLHGKWVSSSSMASLHLKN 74
           +  +++ W+I +SRFF+ P LSSTC+    +    I+K      G W+SSSS +   L  
Sbjct: 17  MAAIRDEWEIQFSRFFNNPALSSTCS-SSTIHPDLIRKTRSLRRGTWISSSSASLQ-LLT 74

Query: 75  DYADARGFVLVVSFQGKVYEEHHIAKLNFSWPQVSCLDECPIRGSRVVFASYRDSLGQA 133
           D++ ++  +L+V   G+++              VSC+   P RGSRVVF SY+D + Q 
Sbjct: 75  DHSTSQA-ILIVRSGGRIH--------------VSCVSGFPARGSRVVFVSYKDCVSQV 118