Jatropha Genome Database

JcCA0293541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293541.10 - phase: 0 /partial
         (317 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025322001 assembled CDS                                       303   9e-83

>GSVIVT01025322001 assembled CDS
          Length = 418

 Score =  303 bits (775), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 147/208 (70%), Positives = 168/208 (80%), Gaps = 8/208 (3%)

Query: 113 RKDLDSAVETVTAKARENGGQSLGFDKSDRKLV---RETEFDKAEALRLLPMKSLSCKIV 169
           R+DL +AVE VTAKA E     L   + ++  V    E  + +AE L +LPMKSLS KI+
Sbjct: 11  RQDLHAAVEKVTAKASE-----LRVSEEEQGEVIVGGENAYHEAEVLGVLPMKSLSSKII 65

Query: 170 VKRSALSLEAFLREHLLSSSPVIISDCMAHWPARIKWNDVDYLKRVAGDRTVPVEVGKTY 229
            KRSALSLE FL ++ +S SPVIISDCM HWPAR +WND+DYLKRVAGDRTVPVEVGK Y
Sbjct: 66  GKRSALSLEGFLCDYFMSGSPVIISDCMGHWPARTRWNDMDYLKRVAGDRTVPVEVGKNY 125

Query: 230 LCQEWKQELITFSQFLERIQPNNSLSAVPTYLAQHPLFDQINELRNDICVPDYCFAGGGE 289
           L  +WKQELITFSQFLERIQ ++  S +PTYLAQHPLFDQI+ELR DI +PDYC+AGGGE
Sbjct: 126 LSSDWKQELITFSQFLERIQSSDCTSTLPTYLAQHPLFDQIHELRKDIFIPDYCYAGGGE 185

Query: 290 LRSLNAWFGPAGTVTPLHHDPHHNILAQ 317
           LRSLNAWFGPAGTVTPLHHDPHHNILAQ
Sbjct: 186 LRSLNAWFGPAGTVTPLHHDPHHNILAQ 213