Jatropha Genome Database

JcCA0293441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293441.10 - phase: 0 /pseudo/partial
         (69 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017289001 assembled CDS                                       108   5e-25
GSVIVT01015516001 assembled CDS                                       104   8e-24
GSVIVT01018897001 assembled CDS                                       100   2e-22
GSVIVT01035831001 assembled CDS                                        93   2e-20
GSVIVT01018123001 assembled CDS                                        77   1e-15

>GSVIVT01017289001 assembled CDS
          Length = 129

 Score =  108 bits (270), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 54/59 (91%), Gaps = 2/59 (3%)

Query: 1  MEEITEGVNNVTITGGDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
          MEEITE VNN+ I+  DLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM I
Sbjct: 1  MEEITEAVNNINIS--DLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 57


>GSVIVT01015516001 assembled CDS
          Length = 130

 Score =  104 bits (260), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 53/59 (89%), Gaps = 2/59 (3%)

Query: 1  MEEITEGVNNVTITGGDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
          MEEITEGVN++ I   D HKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM I
Sbjct: 1  MEEITEGVNSMNI--ADSHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 57


>GSVIVT01018897001 assembled CDS
          Length = 211

 Score = 99.8 bits (247), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 53/59 (89%), Gaps = 2/59 (3%)

Query: 1   MEEITEGVNNVTITGGDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
           +EEIT+GVNN+ I   D HKKN+IQVSNTKKPLFFYVNLAKR+MQQHNEVELSALGM I
Sbjct: 74  VEEITKGVNNMNI--ADSHKKNQIQVSNTKKPLFFYVNLAKRHMQQHNEVELSALGMAI 130


>GSVIVT01035831001 assembled CDS
          Length = 130

 Score = 93.2 bits (230), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 51/59 (86%), Gaps = 1/59 (1%)

Query: 1  MEEITEGVNNVTITGGDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
          ME +TEGVN + I+   L KKNRIQVSNTKKPLFFYVNLAKR+MQQ+N+VELSALGM I
Sbjct: 1  MENLTEGVNKLNISDSSL-KKNRIQVSNTKKPLFFYVNLAKRFMQQYNDVELSALGMAI 58


>GSVIVT01018123001 assembled CDS
          Length = 131

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 40/43 (93%)

Query: 17 DLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
          +  KKNRIQVSN+KKPLFFY+NLAKRY++Q+N+VELSALGM I
Sbjct: 11 ETQKKNRIQVSNSKKPLFFYINLAKRYIKQYNDVELSALGMAI 53