Jatropha Genome Database

JcCA0292601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0292601.20 + phase: 0 /partial
         (402 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030182001 assembled CDS                                       411   e-115
GSVIVT01024559001 assembled CDS                                       395   e-110
GSVIVT01003212001 assembled CDS                                       226   1e-59
GSVIVT01014432001 assembled CDS                                       137   7e-33
GSVIVT01033007001 assembled CDS                                        88   8e-18
GSVIVT01034419001 assembled CDS                                        84   1e-16
GSVIVT01028540001 assembled CDS                                        83   3e-16
GSVIVT01027463001 assembled CDS                                        68   9e-12
GSVIVT01019699001 assembled CDS                                        67   1e-11
GSVIVT01033902001 assembled CDS                                        64   1e-10

>GSVIVT01030182001 assembled CDS
          Length = 856

 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/393 (54%), Positives = 266/393 (67%), Gaps = 27/393 (6%)

Query: 15  SPVHWKQG---SEGKTALAYGYLHRDFLRLVYCDTYHLEESGWRECYISEKRLHCGCIAS 71
           S + W++G     G  A+        F +LV+CD +H ++SGWR+C    KRLHCGCIAS
Sbjct: 18  STIEWRKGWALRSGDFAILCDKCGSAFEQLVFCDMFHSKDSGWRKCTACGKRLHCGCIAS 77

Query: 72  KSLLQLLDFGGVGCTSCAKNYRLHPIRSDEIPNGFG-LLINNACDLESTPLENRVAGRTF 130
           +SLL+LLD GGV C +C ++   HP+  DE  N  G + ++N  ++  T ++N++ G + 
Sbjct: 78  RSLLELLDSGGVNCINCIRSSGPHPMTGDEKANESGAMTVDNVGEIRCTSVDNQLDGGSV 137

Query: 131 DEGKLAQLCRLMEANAPNLLCQSEGADTNAGLGQFRQEEVMHQIVEXXXXXXXXXXXXXX 190
           ++ KL QL      +      QS   + N  LGQ +QEEV+    E              
Sbjct: 138 EKMKLTQLGNDTSGDGLKNFLQSGNDNINGSLGQMKQEEVLPPQGETAN----------- 186

Query: 191 XXXXXXPSILDMRDIHGSHAQPSLSMSMGAPSGTASFAPYPCGVVEGKEQSKTS-PFQQG 249
                    + ++DIH S  Q +LS+++GAPSG  +   +P  VVE +EQ KTS P QQG
Sbjct: 187 ---------MMVKDIHESLVQTNLSITLGAPSGNPNV--FPSAVVEEREQHKTSTPIQQG 235

Query: 250 QRSRPILPKPSKPVLAGSSETNKAAVSELRIARPPAEGRGKNQLLPRYWPRITDQELQQL 309
            RSR +LPKP +  L+   ETN   V ++R+ARPPAEGRG+NQLLPRYWPRITDQELQQ+
Sbjct: 236 PRSRHLLPKPPRSALSPVLETNTGIVPQIRVARPPAEGRGRNQLLPRYWPRITDQELQQI 295

Query: 310 SGDLNSNIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRIQDVKGREWT 369
           SGD NS IVPLFEK+LSASDAGRIGRLVLPKACAEAYFPPISQ EGLPLRIQDVKG+EW 
Sbjct: 296 SGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWV 355

Query: 370 FQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 402
           FQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT
Sbjct: 356 FQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 388


>GSVIVT01024559001 assembled CDS
          Length = 708

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/407 (52%), Positives = 258/407 (63%), Gaps = 42/407 (10%)

Query: 5   ILTNVICTIRSPVHWKQGSEGKTALAYGYLHR---DFLRLVYCDTYHLEESGWRECYISE 61
           I  N  C   +   WK+G   K+       ++    +  LV+C+T+H EE GWR+C +  
Sbjct: 5   ICKNKWCGTTASFEWKKGWTIKSGAVVDLCYKCGSAYENLVFCETFHQEEDGWRQCSLCH 64

Query: 62  KRLHCGCIASKSLLQLLDFGGVGCTSCAKNYRLHPIRSDEIPNGFGLLINNACDLESTPL 121
           KR+HCGCI S    + LD+GGV C+SC K+ + HP+RSD                     
Sbjct: 65  KRIHCGCIVSNYQFEALDYGGVRCSSCLKSPQCHPVRSD--------------------- 103

Query: 122 ENRVAGRTFDEGKLAQLCRLMEANAPNLLCQSEGADTNAGLGQFRQEEVMHQIVEXXXXX 181
                          QL + MEA+  N L QS+  D N  LGQ +Q++ MH + E     
Sbjct: 104 ------------NFMQLGKTMEADELNHLLQSQKGDANVSLGQIKQDDSMHAVREVNTIF 151

Query: 182 XXXXXXXXXXXXXXXPS----ILDMRDIHGSHAQPSLSMSMGAPSGTASF-APYPCGVVE 236
                                +L  +D++ S  QPSL++S+ + SG  +F  P+P   VE
Sbjct: 152 PTTSLPSIGPSEFAKSDNSIPMLMGKDVYESLVQPSLNISLSSSSGPPNFLLPFPGNAVE 211

Query: 237 GKEQSKTS-PFQQGQRSRPILPKPSKPVLAGSSETNKAAVSELRIARPPAEGRGKNQLLP 295
           G E SK++  FQQGQR+R ILPKP    L+  SE NK+ V E+RIARPPAEGRG+NQLLP
Sbjct: 212 GMEHSKSAFTFQQGQRTRHILPKPPNSSLSIGSEANKSMVPEIRIARPPAEGRGRNQLLP 271

Query: 296 RYWPRITDQELQQLSGDLNSNIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEG 355
           RYWPRITDQELQQLSGDLNS IVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEG
Sbjct: 272 RYWPRITDQELQQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEG 331

Query: 356 LPLRIQDVKGREWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 402
           LPLR+QD KG EWTFQFRFWPNNNSRMYVLEGVTPCIQSMQL+AGDT
Sbjct: 332 LPLRVQDAKGTEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDT 378


>GSVIVT01003212001 assembled CDS
          Length = 601

 Score =  226 bits (577), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 121/151 (80%), Gaps = 5/151 (3%)

Query: 257 PKPSKPVLAGSSE-----TNKAAVSELRIARPPAEGRGKNQLLPRYWPRITDQELQQLSG 311
           P PS P+    S       + +  +++R  RP  + RG+NQLLPRYWPRITDQELQQ+SG
Sbjct: 261 PTPSPPLAKKFSGHPHNGVDSSGEAQVRNGRPRGDARGRNQLLPRYWPRITDQELQQISG 320

Query: 312 DLNSNIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRIQDVKGREWTFQ 371
           D NS I PLFEK+LSASDAGRIGRLVLPK CAEAYFP ISQ EGLPL++QD KG EW FQ
Sbjct: 321 DSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPAISQPEGLPLKVQDAKGHEWIFQ 380

Query: 372 FRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 402
           FRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT
Sbjct: 381 FRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT 411



 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 43  YCDTYHLEESGWRECYISEKRLHCGCIASKSLLQLLDFGGVGCTSCA-KNYRLHP 96
           +C+T+H   SGWR C    KR+HCGCIAS     LLD GG+ C  CA KN  L P
Sbjct: 49  FCETFHSNASGWRGCKSCAKRVHCGCIASIHSFTLLDTGGIECIPCARKNVVLTP 103


>GSVIVT01014432001 assembled CDS
          Length = 242

 Score =  137 bits (346), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 85/119 (71%), Gaps = 1/119 (0%)

Query: 282 RPPAEGRGKNQLLPRYWPRITDQELQQLSGDLNSNIVPLFEKVLSASDAG-RIGRLVLPK 340
           +P   G G+  L  +Y PRI+D ELQQ+S DLNS + PLFEK L+ SDA  ++GRLV+PK
Sbjct: 75  QPCGSGAGQKGLDAKYQPRISDHELQQISRDLNSVVTPLFEKTLTISDADYKLGRLVIPK 134

Query: 341 ACAEAYFPPISQSEGLPLRIQDVKGREWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLQA 399
            CA+ YFP IS  EG+ +RI D +GREW F +R+W N NS+MYVL+G+   + SMQ QA
Sbjct: 135 KCAQEYFPLISGPEGVTIRILDTRGREWVFHYRYWSNANSQMYVLDGLKDFVISMQWQA 193


>GSVIVT01033007001 assembled CDS
          Length = 287

 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 320 LFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRIQDVKGRE-WTFQFRFWPNN 378
           LFEK L  SD G + R+VLPK  AE + P +   EG+ + + D+ G+  W F++RFWPNN
Sbjct: 94  LFEKELKNSDVGSLRRMVLPKKSAETHLPLLEAKEGILITMYDLDGQHVWNFKYRFWPNN 153

Query: 379 NSRMYVLEGVTPCIQSMQLQAGD 401
           NSRMYVLE     +    LQ GD
Sbjct: 154 NSRMYVLENTGEFVNVHGLQLGD 176


>GSVIVT01034419001 assembled CDS
          Length = 305

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 320 LFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRIQDVK-GREWTFQFRFWPNN 378
           L +K L  +D G +GR+VLPK  AEA  PP+   +GL L+++D+K    W F++R+WPNN
Sbjct: 161 LVQKELRNTDVGNLGRIVLPKKDAEANLPPLVAKDGLVLQMEDMKYSVNWKFKYRYWPNN 220

Query: 379 NSRMYVLEGVTPCIQSMQLQAGD 401
            SRMYV+E     ++   LQ GD
Sbjct: 221 RSRMYVMENTGNFVKMHDLQPGD 243


>GSVIVT01028540001 assembled CDS
          Length = 564

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 14/125 (11%)

Query: 291 NQLLPRYWPRITDQEL-------QQLSGDLNSNIVP------LFEKVLSASDAGRIGRLV 337
           NQ    +WP   D++        +QL+ +      P      L +KVL  SD G +GR+V
Sbjct: 381 NQANWVFWPSAVDRQAGQAQNNPRQLAAERRQGWKPEKNLKFLLQKVLKQSDVGNLGRIV 440

Query: 338 LPKACAEAYFPPISQSEGLPLRIQDV-KGREWTFQFRFWPNNNSRMYVLEGVTPCIQSMQ 396
           LPK  AE + P +   +G+ + ++D+   R W  ++RFWPNN SRMY+LE     ++S  
Sbjct: 441 LPKKEAETHLPELEARDGITIPMEDIGTSRVWNMRYRFWPNNKSRMYLLENTGDFVRSNG 500

Query: 397 LQAGD 401
           LQ GD
Sbjct: 501 LQEGD 505


>GSVIVT01027463001 assembled CDS
          Length = 375

 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 56/85 (65%), Gaps = 5/85 (5%)

Query: 320 LFEKVLSASDAGRIGRLVLPKACAEAYFPPISQS--EGLPLRIQDVKGREWTFQFRFWPN 377
           +F+KV++ SD G++ RLV+PK  AE YFP  S +  +GL L  +D  G+ W F++ +W  
Sbjct: 94  MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSASDKGLLLNFEDRDGKPWRFRYSYW-- 151

Query: 378 NNSRMYVL-EGVTPCIQSMQLQAGD 401
           N+S+ YV+ +G +  ++  +L AGD
Sbjct: 152 NSSQSYVMTKGWSRFVKEKKLDAGD 176


>GSVIVT01019699001 assembled CDS
          Length = 380

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 56/85 (65%), Gaps = 5/85 (5%)

Query: 320 LFEKVLSASDAGRIGRLVLPKACAEAYFPPISQS--EGLPLRIQDVKGREWTFQFRFWPN 377
           +F+KV++ SD G++ RLV+PK  AE YFP  S +  +GL L  +D  G+ W F++ +W  
Sbjct: 156 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRSGKPWRFRYSYW-- 213

Query: 378 NNSRMYVL-EGVTPCIQSMQLQAGD 401
           N+S+ YV+ +G +  ++  +L AGD
Sbjct: 214 NSSQSYVMTKGWSRFVKEKKLDAGD 238


>GSVIVT01033902001 assembled CDS
          Length = 239

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 5/86 (5%)

Query: 320 LFEKVLSASDAGRIGRLVLPKACAEAYFP--PISQSEGLPLRIQDVKGREWTFQFRFWPN 377
           +FEK L+ SD G++ RLV+PK  AE YFP    S  +GL L  +D  G+ W F++ +W  
Sbjct: 1   MFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGDSGEKGLLLSFEDECGKCWRFRYSYW-- 58

Query: 378 NNSRMYVL-EGVTPCIQSMQLQAGDT 402
           N+S+ YVL +G +  ++  +L AGD 
Sbjct: 59  NSSQSYVLTKGWSRFVKEKRLDAGDV 84