Jatropha Genome Database

JcCA0292331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0292331.10 + phase: 0 
         (60 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015155001 assembled CDS                                        79   5e-16
GSVIVT01015283001 assembled CDS                                        48   9e-07

>GSVIVT01015155001 assembled CDS
          Length = 354

 Score = 78.6 bits (192), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/55 (74%), Positives = 48/55 (87%), Gaps = 2/55 (3%)

Query: 1  MKKGSLNPNVKLKLSLPPPAEVSLSKFLTQSGTFMDGDLLVNRDGVRIVSQIESE 55
          M++G LNP+  LKL+LPP  E SL+KFLTQSGTFMDGDLLVNRDGVRIVS+ E+E
Sbjct: 1  MRRGPLNPS-NLKLTLPPD-EDSLTKFLTQSGTFMDGDLLVNRDGVRIVSKSEAE 53


>GSVIVT01015283001 assembled CDS
          Length = 354

 Score = 47.8 bits (112), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 5  SLNPNVKLKLSLPPPAEVSLSKFLTQSGTFMDGDLLVNRDGVRIVSQ 51
          S  P  +LKLS+P   E  ++ FLT SGTF DGDLL+N+ G+R++S+
Sbjct: 3  SKKPLKQLKLSVPA-QETPITSFLTASGTFQDGDLLLNQKGLRLISE 48