Jatropha Genome Database

JcCA0291961.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0291961.20 + phase: 0 /partial
         (469 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027919001 assembled CDS                                       368   e-102
GSVIVT01028428001 assembled CDS                                       135   3e-32
GSVIVT01015550001 assembled CDS                                       110   1e-24
GSVIVT01013133001 assembled CDS                                       108   5e-24
GSVIVT01017324001 assembled CDS                                       105   5e-23
GSVIVT01024773001 assembled CDS                                        70   2e-12
GSVIVT01032859001 assembled CDS                                        64   2e-10

>GSVIVT01027919001 assembled CDS
          Length = 531

 Score =  368 bits (944), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 238/509 (46%), Positives = 304/509 (59%), Gaps = 58/509 (11%)

Query: 1   MLLRSASNPLI-KSLLSPFS------------GSLNPDIDAKH--HLS-------SNILP 38
           MLLRS+S P++  +LLSPFS            G+    I   H  HLS       S+ LP
Sbjct: 1   MLLRSSSTPVLGTTLLSPFSESPSRDSESSSHGNPTTKITFSHSGHLSFPLFSCNSSPLP 60

Query: 39  HT-DKE-TISLRHKGFRRAFSDSNLEKLVYPD-KLEELHFS--NKPKKFPKRNQKTMLSS 93
           H+ D+E   S+  KGFRR+ S+ NLE L +    LEE   S  N  KK+  +  K ML +
Sbjct: 61  HSFDQEPNSSINPKGFRRSRSEGNLEGLGHSSFDLEEFRRSESNTSKKYFDKTHKAMLET 120

Query: 94  VPSFSIFNVNDELEDAENNG-----GEREGLMRTVTIGESIEAKGDEEFTFGKKSMGLIX 148
            PSFSI+N+   +E  E +      GE   L RT+TI ESI      EF+FG+K+MGLI 
Sbjct: 121 TPSFSIYNLTQGVEGEEGSQQEEIEGEVFVLERTITIEESIRGTTSREFSFGRKTMGLIE 180

Query: 149 XXXXXXXXXDLNGIENINLDEVKEPVSPPMYLASXXXXXXXXXXXXXXXXXXXMALPNFD 208
                    D+NG + + +++  EPVSP MYLA+                    A  +FD
Sbjct: 181 EEEEEE---DVNGFQKLGVEDGVEPVSPLMYLATGLGMDGAGFGGGRVD----FAAADFD 233

Query: 209 ESGDLEEYYKRMIDEYPCHPLFLANYAQLLQSKGDLHGAEEYYHRASLADPGDSEILLKY 268
           ESGD+EEYY+RM++E PC+PLFL NYAQLLQSKGDL  AEEYY RA+LADP D EIL++Y
Sbjct: 234 ESGDVEEYYRRMVNEDPCNPLFLRNYAQLLQSKGDLQRAEEYYSRATLADPQDGEILMQY 293

Query: 269 AKLEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLWXXXXXXXXXXQQLQHIKVEE 328
           AKL W +H +Q  ALS F+ A +VA  DS VLAA ASFLW           +   +    
Sbjct: 294 AKLIWDVHRDQARALSYFERAAKVASDDSHVLAANASFLWDIEDEGEDDTAEQGLV---- 349

Query: 329 EEHLTRLVNSAANQDFELLQLPPSM-----LAIDVA--------DHATSDIDKGIDVDEY 375
           EE L+   N   +Q+ E     PS+     L IDVA        D ++ +  +   V+E+
Sbjct: 350 EEGLSEFHN--LDQEDENKPASPSLHPAAGLGIDVAACGSVGCVDFSSINASEISKVEEH 407

Query: 376 YKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKLVWEL 435
           YK+M+EENP + L L NYAQFL+Q+KG+L  AEEYYSRA+L +PGDGEIMS+YAKL WEL
Sbjct: 408 YKKMVEENPCNPLFLRNYAQFLFQTKGELQQAEEYYSRAILADPGDGEIMSQYAKLAWEL 467

Query: 436 HRDHDKASSYFERAVQAKPEDSHVLAAYA 464
           H D DKA SYF++AVQA P DSHVLAAYA
Sbjct: 468 HHDRDKALSYFKQAVQATPGDSHVLAAYA 496



 Score =  141 bits (355), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 102/170 (60%), Gaps = 5/170 (2%)

Query: 159 LNGIENINLDEVKEPVSPPMYLASXXXXXXXXXXXXXXXXXXXMALPNFDESGDLEEYYK 218
           L+   N++ ++  +P SP ++ A+                   +   N  E   +EE+YK
Sbjct: 353 LSEFHNLDQEDENKPASPSLHPAAGLGIDVAACGSVGCVDFSSI---NASEISKVEEHYK 409

Query: 219 RMIDEYPCHPLFLANYAQLL-QSKGDLHGAEEYYHRASLADPGDSEILLKYAKLEWQLHH 277
           +M++E PC+PLFL NYAQ L Q+KG+L  AEEYY RA LADPGD EI+ +YAKL W+LHH
Sbjct: 410 KMVEENPCNPLFLRNYAQFLFQTKGELQQAEEYYSRAILADPGDGEIMSQYAKLAWELHH 469

Query: 278 NQDTALSNFKHAVRVAPQDSQVLAAYASFLWXXXXXXXXXXQQLQ-HIKV 326
           ++D ALS FK AV+  P DS VLAAYA FLW            +Q HI+V
Sbjct: 470 DRDKALSYFKQAVQATPGDSHVLAAYARFLWETDEEEEENNASMQDHIQV 519



 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 80/107 (74%), Gaps = 1/107 (0%)

Query: 359 ADHATSDIDKGIDVDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIE 418
            D A +D D+  DV+EYY+RM+ E+P + L L NYAQ L QSKGDL  AEEYYSRA L +
Sbjct: 225 VDFAAADFDESGDVEEYYRRMVNEDPCNPLFLRNYAQLL-QSKGDLQRAEEYYSRATLAD 283

Query: 419 PGDGEIMSRYAKLVWELHRDHDKASSYFERAVQAKPEDSHVLAAYAS 465
           P DGEI+ +YAKL+W++HRD  +A SYFERA +   +DSHVLAA AS
Sbjct: 284 PQDGEILMQYAKLIWDVHRDQARALSYFERAAKVASDDSHVLAANAS 330


>GSVIVT01028428001 assembled CDS
          Length = 121

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 72/87 (82%)

Query: 379 MLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKLVWELHRD 438
           MLEENP + L L NYAQFLYQSK DL  AEEY  RA+L +P DGEI+S+YAKLVWELH D
Sbjct: 1   MLEENPSNPLFLRNYAQFLYQSKHDLQAAEEYLCRAILADPRDGEILSQYAKLVWELHHD 60

Query: 439 HDKASSYFERAVQAKPEDSHVLAAYAS 465
            D+ASSYFERAVQA PEDSHV AAYAS
Sbjct: 61  QDRASSYFERAVQAAPEDSHVQAAYAS 87



 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 68/90 (75%), Gaps = 1/90 (1%)

Query: 220 MIDEYPCHPLFLANYAQLL-QSKGDLHGAEEYYHRASLADPGDSEILLKYAKLEWQLHHN 278
           M++E P +PLFL NYAQ L QSK DL  AEEY  RA LADP D EIL +YAKL W+LHH+
Sbjct: 1   MLEENPSNPLFLRNYAQFLYQSKHDLQAAEEYLCRAILADPRDGEILSQYAKLVWELHHD 60

Query: 279 QDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
           QD A S F+ AV+ AP+DS V AAYASFLW
Sbjct: 61  QDRASSYFERAVQAAPEDSHVQAAYASFLW 90


>GSVIVT01015550001 assembled CDS
          Length = 288

 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 71/94 (75%)

Query: 371 DVDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAK 430
           +++ YY+ M+E NP ++LLL NYA+FL + +GD   AEEY  RA+L  P DG I+S +A 
Sbjct: 151 NMESYYRTMIEANPGNALLLGNYARFLKEVRGDYIKAEEYCGRAILANPNDGNILSLFAD 210

Query: 431 LVWELHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
           L+W++H+D D+A SYF++AV+A P+D  VLA+YA
Sbjct: 211 LIWQVHKDSDRAESYFDQAVKASPDDCFVLASYA 244



 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 63/99 (63%), Gaps = 1/99 (1%)

Query: 211 GDLEEYYKRMIDEYPCHPLFLANYAQLLQS-KGDLHGAEEYYHRASLADPGDSEILLKYA 269
           G++E YY+ MI+  P + L L NYA+ L+  +GD   AEEY  RA LA+P D  IL  +A
Sbjct: 150 GNMESYYRTMIEANPGNALLLGNYARFLKEVRGDYIKAEEYCGRAILANPNDGNILSLFA 209

Query: 270 KLEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
            L WQ+H + D A S F  AV+ +P D  VLA+YA FLW
Sbjct: 210 DLIWQVHKDSDRAESYFDQAVKASPDDCFVLASYAHFLW 248


>GSVIVT01013133001 assembled CDS
          Length = 178

 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 64/90 (71%)

Query: 375 YYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKLVWE 434
           YY+ ML+ NP  SLLL NY +FL++ + D   AEEYY RA+L  PGDGE++S YAKL+WE
Sbjct: 63  YYEEMLKLNPGDSLLLRNYGKFLHEVEKDAIRAEEYYGRAILASPGDGEVLSLYAKLIWE 122

Query: 435 LHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
             RD D+A  YF++AV A P D  V+ +YA
Sbjct: 123 TERDQDRAQCYFDQAVSASPNDCMVMGSYA 152



 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 55/97 (56%), Gaps = 1/97 (1%)

Query: 213 LEEYYKRMIDEYPCHPLFLANYAQLL-QSKGDLHGAEEYYHRASLADPGDSEILLKYAKL 271
           L  YY+ M+   P   L L NY + L + + D   AEEYY RA LA PGD E+L  YAKL
Sbjct: 60  LATYYEEMLKLNPGDSLLLRNYGKFLHEVEKDAIRAEEYYGRAILASPGDGEVLSLYAKL 119

Query: 272 EWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
            W+   +QD A   F  AV  +P D  V+ +YA F+W
Sbjct: 120 IWETERDQDRAQCYFDQAVSASPNDCMVMGSYAQFMW 156


>GSVIVT01017324001 assembled CDS
          Length = 289

 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 66/93 (70%)

Query: 372 VDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKL 431
            D YY++M+E NP ++L L NYA+FL + +GDL  AEEY  RA+L+ P DG ++S YA L
Sbjct: 153 TDVYYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYCGRAILVNPSDGNVLSFYADL 212

Query: 432 VWELHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
           +W   +D  +A +YF +AV+  P+D +VLA+YA
Sbjct: 213 IWNNQKDAQRAETYFNQAVRVAPDDCYVLASYA 245



 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 62/101 (61%), Gaps = 3/101 (2%)

Query: 209 ESGDLEEYYKRMIDEYPCHPLFLANYAQLLQS-KGDLHGAEEYYHRASLADPGDSEILLK 267
           ES D+  YY++MI+  P + LFL NYA+ L+  +GDL  AEEY  RA L +P D  +L  
Sbjct: 151 ESTDV--YYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYCGRAILVNPSDGNVLSF 208

Query: 268 YAKLEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
           YA L W    +   A + F  AVRVAP D  VLA+YA FLW
Sbjct: 209 YADLIWNNQKDAQRAETYFNQAVRVAPDDCYVLASYAHFLW 249


>GSVIVT01024773001 assembled CDS
          Length = 469

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 14/119 (11%)

Query: 360 DHAT-----SDIDKGIDVDEY---------YKRMLEENPYSSLLLSNYAQFLYQSKGDLS 405
           DH T     S ++  I+ D+Y         Y+  L   P + LLL+NYAQFLY    D  
Sbjct: 327 DHETMQRFVSPVEAKIEADDYADYFRAELLYQMGLAREPNNPLLLANYAQFLYLVAHDYD 386

Query: 406 GAEEYYSRALLIEPGDGEIMSRYAKLVWELHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
            AEEY+ RA+ +EP D E  ++YA  +W   +D   A   +  A+ A P +++  A YA
Sbjct: 387 RAEEYFKRAIAVEPPDAEAYNKYASFLWVAKKDLWAAEETYLEAIAADPSNTYYAANYA 445



 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 217 YKRMIDEYPCHPLFLANYAQLLQSKG-DLHGAEEYYHRASLADPGDSEILLKYAKLEWQL 275
           Y+  +   P +PL LANYAQ L     D   AEEY+ RA   +P D+E   KYA   W  
Sbjct: 357 YQMGLAREPNNPLLLANYAQFLYLVAHDYDRAEEYFKRAIAVEPPDAEAYNKYASFLWVA 416

Query: 276 HHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
             +   A   +  A+   P ++   A YA FLW
Sbjct: 417 KKDLWAAEETYLEAIAADPSNTYYAANYAHFLW 449


>GSVIVT01032859001 assembled CDS
          Length = 311

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%)

Query: 372 VDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKL 431
            D  Y+  + E+P + LL  NY QFL     D   AEE + RA+ +EP DGE +++YA  
Sbjct: 199 TDLLYQIRISEDPNNPLLFCNYGQFLRLFARDQDRAEECFKRAVEVEPEDGEALNQYANF 258

Query: 432 VWELHRDHDKASSYFERAVQAKPEDSHVLAAYAS 465
           +W + +D   A   F +A+ A+P + + ++ YA+
Sbjct: 259 LWMVRKDLWGAEERFLQAMAAEPGNPYHVSNYAT 292



 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 217 YKRMIDEYPCHPLFLANYAQLLQ-SKGDLHGAEEYYHRASLADPGDSEILLKYAKLEWQL 275
           Y+  I E P +PL   NY Q L+    D   AEE + RA   +P D E L +YA   W +
Sbjct: 203 YQIRISEDPNNPLLFCNYGQFLRLFARDQDRAEECFKRAVEVEPEDGEALNQYANFLWMV 262

Query: 276 HHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
             +   A   F  A+   P +   ++ YA+FLW
Sbjct: 263 RKDLWGAEERFLQAMAAEPGNPYHVSNYATFLW 295



 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 373 DEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKLV 432
           +E +KR +E  P     L+ YA FL+  + DL GAEE + +A+  EPG+   +S YA  +
Sbjct: 235 EECFKRAVEVEPEDGEALNQYANFLWMVRKDLWGAEERFLQAMAAEPGNPYHVSNYATFL 294

Query: 433 W 433
           W
Sbjct: 295 W 295