Jatropha Genome Database

JcCA0291961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0291961.10 - phase: 0 /partial
         (158 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027920001 assembled CDS                                       229   4e-61
GSVIVT01032869001 assembled CDS                                        60   4e-10
GSVIVT01028889001 assembled CDS                                        54   4e-08
GSVIVT01031119001 assembled CDS                                        50   4e-07
GSVIVT01024787001 assembled CDS                                        49   1e-06

>GSVIVT01027920001 assembled CDS
          Length = 447

 Score =  229 bits (584), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 107/155 (69%), Positives = 129/155 (83%), Gaps = 5/155 (3%)

Query: 1   MSRVIPQPFQLLELNVISGQDLAQVSRKMRTYAVAWVHPERKLSTRLDIYSHNNPTWNDK 60
           MSR+  +P QLLE+N+IS QDLA V R MRTYA+AWVHP+RKLSTR+D   HN+PTWNDK
Sbjct: 1   MSRL--RPLQLLEINLISAQDLAPVGRSMRTYAIAWVHPDRKLSTRIDSTGHNSPTWNDK 58

Query: 61  FVFRVDDEFLYRETSAIMVEIYAVSWFRDIHVGTVRVIVGNLIPPAEHKKHQKHGVQLGM 120
           FVFRVDDEFL  +TSA+M++IY+  WFRD HVGTVR++VGNLIPP+    H+    Q+GM
Sbjct: 59  FVFRVDDEFLRADTSAVMIDIYSQHWFRDYHVGTVRILVGNLIPPSVRPGHR---TQMGM 115

Query: 121 RFVALQVRRRSGRPQGILNIGVAFLDASRKSMPLY 155
           RF+ALQVRR SGRPQG+LNIGVA LD+S +SMPLY
Sbjct: 116 RFMALQVRRSSGRPQGLLNIGVALLDSSMRSMPLY 150


>GSVIVT01032869001 assembled CDS
          Length = 323

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 6/135 (4%)

Query: 12  LELNVISGQDLAQVSR-KMRTYAVAWVHPERKLSTRLDIYSHNNPTWNDKFVFRVDDEFL 70
           +E+ +IS + L + S  K++ +AV WV P  K  T++D   + NP W  KF   VDD   
Sbjct: 6   IEVCLISARGLQRSSLWKLQWFAVGWVDPNNKYCTKIDASGNANPVWKTKFSTLVDDSES 65

Query: 71  YRETSAIMVEIYAVS--WFRDIHVGTVRVIVGNLIPPAEHKKHQKHGVQLGMRFVALQVR 128
             +  A+ VE+Y+    + R+   GT  V +   +  A+H K+ +          + Q+R
Sbjct: 66  KFQDLALYVEVYSREPIFLREKLQGTATVNLKEFL--AKHIKNSEASKPGTQDVGSFQLR 123

Query: 129 -RRSGRPQGILNIGV 142
            R+S +P G ++I +
Sbjct: 124 KRKSSKPHGFVDISI 138


>GSVIVT01028889001 assembled CDS
          Length = 715

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 27/146 (18%)

Query: 12  LELNVISGQDLAQVSRK---MRTYAVAWVHPERKLSTRLDIYSHNNPTWNDKFVF----R 64
           LEL + S +DL  V+R+   ++ Y V WV P  KLST++D     +P WN+  +     R
Sbjct: 35  LELIISSAKDLKNVNRRHGSLKPYVVVWVDPAAKLSTKVDNEGDTSPGWNETLLIPVPSR 94

Query: 65  VDDEFLYRETSAIMVEIYAVSWFRDIHVGTVRVIVGN---LIPPAEHKKHQKHGVQLGMR 121
           ++D  LY +          V  F+       + +VG+    +P      H    V  G +
Sbjct: 95  IEDSTLYLD----------VVHFKADDEDDTKPVVGSARLFLP------HVVDEVGFGAQ 138

Query: 122 FV-ALQVRRRSGRPQGILNIGVAFLD 146
            +  L++ R SG PQG + + V+  D
Sbjct: 139 AIRTLELHRPSGHPQGKVEVKVSVRD 164


>GSVIVT01031119001 assembled CDS
          Length = 276

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 12/140 (8%)

Query: 9   FQLLELNVISGQDLAQVS--RKMRTYAVAWV--HPERKLSTRLDIYSHNNPTWNDKFVFR 64
           ++ L++ V+  +DL  V+   KM  Y V  +   P     T +D     +P WN    F 
Sbjct: 3   YRALDIKVLEAKDLKDVNLFSKMDVYVVVTISGDPRTVQKTPVDKDGGTSPKWNFSMKFT 62

Query: 65  VDDEFLYRETSAIMVEIYAVSWFRDIHVGTVRVIVGNLIPPAEHKKHQKHGVQLGMRFVA 124
           VDD   ++    +   + +     D  +G V V +  L+  A   K          R V+
Sbjct: 63  VDDALAHQNRIGLNFTLRSNRALGDRDIGEVYVPLKELLDNASDDKVD--------RVVS 114

Query: 125 LQVRRRSGRPQGILNIGVAF 144
            QVR++SG+PQG L+    F
Sbjct: 115 FQVRKQSGKPQGTLSFSYKF 134


>GSVIVT01024787001 assembled CDS
          Length = 315

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 18/138 (13%)

Query: 12  LELNVISGQDLAQVS---RKMRTYAVAWVHPERKLSTRLDIYSHNNPTWNDKFVFRVDDE 68
           L++ ++S + L  V+     ++ YA+ WV PER+ +T+ D      P WN+ F   ++  
Sbjct: 20  LDVTIVSAKHLKNVNWRNGDLKPYAIFWVDPERRFATKPDDCGSTRPVWNEHFSIPINTP 79

Query: 69  FLYRETSAIMVEIY--AVSWFRDIHVGTVRVIVGNLIPPAEHKKHQKHGVQLGMRFVALQ 126
                 S   +EI+    S      VG +R  + +L+   E     +           L+
Sbjct: 80  PY---DSVFTLEIFHSKPSETPKPLVGVLRFPIKDLVDSDESANSIR----------TLE 126

Query: 127 VRRRSGRPQGILNIGVAF 144
           +RR SGRP G + I +A 
Sbjct: 127 LRRPSGRPNGKIRIKLAL 144