Jatropha Genome Database

JcCA0291681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0291681.10 - phase: 0 
         (395 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024729001 assembled CDS                                       405   e-113
GSVIVT01032812001 assembled CDS                                       338   2e-93
GSVIVT01029304001 assembled CDS                                       121   7e-28
GSVIVT01034648001 assembled CDS                                        56   3e-08
GSVIVT01033944001 assembled CDS                                        55   7e-08

>GSVIVT01024729001 assembled CDS
          Length = 955

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/397 (56%), Positives = 268/397 (67%), Gaps = 39/397 (9%)

Query: 1   MPTPVSVARQCLTDEXXXXXXXXXXXXXXXSHAQTTSLHAVSALLALPSSILRDACARAR 60
           MPTPVS+ARQCLTDE               SHAQTTSLHA+SALLA PSS LRDACARAR
Sbjct: 1   MPTPVSIARQCLTDEAARALDDAVGVARRRSHAQTTSLHAISALLAFPSSTLRDACARAR 60

Query: 61  NSPCSSRLQFRALELCVGVSLDRLSSSKTLEEPPISNSLMAAIKRSQANQRRHPDNFHLQ 120
           +S  S RLQFRALEL VGVSLDRL SSK LEEPP+SNSLMAAIKRSQA+QRRHP+NFHLQ
Sbjct: 61  SSAYSPRLQFRALELSVGVSLDRLPSSKALEEPPVSNSLMAAIKRSQASQRRHPENFHLQ 120

Query: 121 QIHCNQQPPSVLKVELKYFILSILDDPIVSRVLGEAGFRSCDIKLAIIHPPVTPQAAKFS 180
           Q     Q  S L+VELK+FILSILDDPIVSRV GEAGFRSCDIK+A+I PP++P  ++F 
Sbjct: 121 Q---QNQTASFLRVELKHFILSILDDPIVSRVFGEAGFRSCDIKIAMIQPPLSP-VSRFP 176

Query: 181 RTRYPPLFLYNLTGSDPVQPGLSFPF---SGREDVDEDCRRVSEALMXXXXXXXXXXXXX 237
           RTR PP+FL NLT SDP +   SFPF   SG  D DE+ RR+ E L              
Sbjct: 177 RTRCPPIFLCNLTDSDPARRTFSFPFAGVSGSGDGDENSRRIGEVLT--RKTGKNPLLIG 234

Query: 238 VCAGDALNRFIECVNMDKEKILPSEISGLRVISIEKEIVEFVSEGGKEREKMGLKFEELR 297
           VC+ DAL  F +C                           FV  GG E +K+GLK +EL 
Sbjct: 235 VCSSDALRCFADC---------------------------FVGRGGSE-DKLGLKLKELG 266

Query: 298 NELDQCSGPGVLLNVGELKGLVNKSDSIDDALSYLVSKLTGLVEGFRDKLWLMGAAAKHE 357
           +  +Q SGPG+ +N GELK LV   D+  +A S++VSKLT L++   + LWLMG++  +E
Sbjct: 267 HMAEQYSGPGIAVNFGELKALVG-DDAPGEAASFVVSKLTSLLKAHPN-LWLMGSSGSYE 324

Query: 358 TYSKLLGQFPAIEKDWDLHILPITSSKSPFDCFGSKS 394
           TY K L QFP+IE+DWDLH+LPITSS+S  + F S+S
Sbjct: 325 TYLKFLTQFPSIEEDWDLHLLPITSSRSSVEGFCSRS 361


>GSVIVT01032812001 assembled CDS
          Length = 764

 Score =  338 bits (868), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 195/389 (50%), Positives = 247/389 (63%), Gaps = 33/389 (8%)

Query: 1   MPTPVSVARQCLTDEXXXXXXXXXXXXXXXSHAQTTSLHAVSALLALPSSILRDACARAR 60
           MPT VS+ARQCLT E                HAQTTSLHAVSA+L+LPSS+LRDACARAR
Sbjct: 1   MPTSVSLARQCLTPEAAHALDEAVGVARRRGHAQTTSLHAVSAMLSLPSSLLRDACARAR 60

Query: 61  NSPCSSRLQFRALELCVGVSLDRLSSSKTLEEPPISNSLMAAIKRSQANQRRHPDNF--H 118
           NS  S+RLQF+ALELC+ VSLDR+ S++  ++PP+SNSLMAAIKRSQANQRR P+NF  +
Sbjct: 61  NSAYSARLQFKALELCLSVSLDRVPSTQLADDPPVSNSLMAAIKRSQANQRRQPENFQLY 120

Query: 119 LQQIHCNQQPPSVLKVELKYFILSILDDPIVSRVLGEAGFRSCDIKLAIIHPPVTPQAAK 178
            Q    +    S +KVEL++ ILSILDDP+VSRV GEAGFRSCDIKLAI+ P   PQ  +
Sbjct: 121 QQLQQQSSSSISCIKVELQHLILSILDDPVVSRVFGEAGFRSCDIKLAIVRP--LPQLLR 178

Query: 179 FSRTRYPPLFLYNLTGSDPVQPGLSFPFSGREDVDEDCRRVSEALMXXXXXXXXXXXXXV 238
           +SR+R PPLFL N   SDP +   SFP+SG    DE+C+R+ E L              V
Sbjct: 179 YSRSRGPPLFLCNFIDSDPSRRSFSFPYSGFFTGDENCKRIGEVL--GRGKGRNPLLVGV 236

Query: 239 CAGDALNRFIECVNMDKEKILPSEISGLRVISIEKEIVEFVSEGGKEREKMGLKFEELRN 298
           CA DAL  F E V   +  ILP EISG                           FEE+  
Sbjct: 237 CAYDALQSFTEMVEKGRYNILPVEISG---------------------------FEEVGV 269

Query: 299 ELDQCSGPGVLLNVGELKGLVNKSDSIDDALSYLVSKLTGLVEGFRDKLWLMGAAAKHET 358
            +  C G G+++N G+LK  +++ D+    +SY+VS+LT L+E    K+ LMGA + +ET
Sbjct: 270 LVQHCLGAGLVVNFGDLKVFIDRDDASVGVVSYVVSQLTRLLEIHGGKVRLMGAVSSYET 329

Query: 359 YSKLLGQFPAIEKDWDLHILPITSSKSPF 387
           Y K L ++P+IEKDWDL +LPITS + P 
Sbjct: 330 YLKFLNRYPSIEKDWDLQLLPITSLRPPM 358


>GSVIVT01029304001 assembled CDS
          Length = 974

 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 188/411 (45%), Gaps = 56/411 (13%)

Query: 9   RQCLTDEXXXXXXXXXXXXXXXSHAQTTSLHAVSALLALPSSILRDACARARNSPCSSRL 68
           +Q LT E                HAQ T LH  + LL+  +S+LR AC +++ +  +  L
Sbjct: 9   QQTLTTEAASVLKHSLSLARRRGHAQVTPLHVAATLLSSRASLLRRACLKSQPNQSTHPL 68

Query: 69  QFRALELCVGVSLDRLSSSKT---LEEPPISNSLMAAIKRSQANQRRHPDNFHLQQIHCN 125
           Q RALELC  V+L+RL ++       +P +SN+L+AA+KR+QA+QRR       QQ    
Sbjct: 69  QCRALELCFNVALNRLPTTPGPLLHGQPSLSNALIAALKRAQAHQRR--GCIEQQQ---- 122

Query: 126 QQPPSVLKVELKYFILSILDDPIVSRVLGEAGFRSCDIK--------------LAIIHPP 171
           QQP   +KVEL+  I+SILDDP VSRV+ EAGF S  +K                II+P 
Sbjct: 123 QQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKNNLEDSSASSVFQCYNIINPS 182

Query: 172 VTPQAA--KFSRTRYPPLFLYNLTGSDPVQPGLSFPFSGREDVDEDCRRVSEALMXXXXX 229
              Q     +S  + P LF        P +   S P +    V ED + V E L+     
Sbjct: 183 TFWQTHILAYSSEQNPLLF-------SPQKKLSSNPITDSTSVKEDLKLVLEVLLRKKRR 235

Query: 230 XXXXXXXXVCAGDALNRFIECVNMDKEKILPSEISGLRVISIEKEIVEFVSEGGKEREKM 289
                   V   + L    E +   +   +P E+     +  +      V+    +RE++
Sbjct: 236 NTVIVGDSVSTTEGL--VAELMGRIERGEVPEELKSAHFVKFQ---FSPVTLRFMKREEV 290

Query: 290 GLKFEELRNELDQCSG---PGVLLNVGELK------------GLVNKSDSIDDALSYLVS 334
            +   +L+ ++D  +     G ++  G+LK            G  N   S  + + +LV+
Sbjct: 291 EMNLSDLKRKVDSLASGGGGGAIIYAGDLKWTVEAAVSDRDGGFPNGEASAYNPIDHLVA 350

Query: 335 KLTGLVEGF---RDKLWLMGAAAKHETYSKLLGQFPAIEKDWDLHILPITS 382
           ++  L+  +     ++WLM A A ++TY +   + P++E  W L  + + S
Sbjct: 351 EIGRLLSDYTTSNTRVWLM-ATASYQTYMRCQMKQPSLEIQWALQAVSVPS 400


>GSVIVT01034648001 assembled CDS
          Length = 781

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 11/106 (10%)

Query: 1   MPTPVSVARQCLTDEXXXXXXXXXXXXXXXSHAQTTSLHAVSALLALPSSILRDACARAR 60
           M   V   +Q LT +                HAQ T LH  S +LA  S +LR AC R+ 
Sbjct: 1   MRAGVCSVQQVLTADAASMVKQAVTLARRRGHAQVTPLHVASVMLASSSGLLRSACLRSH 60

Query: 61  NSPCSSRLQFRALELCVGVSLDRL--SSSKTL-----EEPPISNSL 99
           + P    LQ +ALELC  V+L+RL  SSS  L       P +SN+L
Sbjct: 61  SHP----LQCKALELCFNVALNRLPASSSSPLLAPHSSHPSLSNAL 102


>GSVIVT01033944001 assembled CDS
          Length = 430

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 22/204 (10%)

Query: 192 LTGSDPVQPGLSFPFSGREDV-DEDCRRVSEALMXXXXXXXXXXXXXVCAGDALNRFIEC 250
           + G     P +S   S    V +ED   V E LM             +   + + R +  
Sbjct: 88  MLGPHSQHPSISNALSKENPVRNEDVMSVIENLMNKRRKNTVIVGECLATIEGVVRGV-- 145

Query: 251 VNMDK--EKILPSEISGLRVISIEKEIVEFVSEGGKEREKMGLKFEELRNELDQCSGPGV 308
             MDK  +  +P  +  +++IS+        S G   RE++  K  EL++ +  C G GV
Sbjct: 146 --MDKVDKGDVPEALRDVKLISLP-----LFSFGHHSREEVEQKLGELKSLVKSCVGRGV 198

Query: 309 LLNVGELKGLVN-KSDSIDDALSY------LVSKLTGLVEGFRD--KLWLMGAAAKHETY 359
           +L + +LK   + ++ S +   +Y      ++ +L  LV GF +  + WLMG A   +TY
Sbjct: 199 ILYLEDLKWTTDYRASSSEQGRNYYCPVEHMIMELGKLVCGFGENGRFWLMGIAT-FQTY 257

Query: 360 SKLLGQFPAIEKDWDLHILPITSS 383
           S+     P++E  W LH L I +S
Sbjct: 258 SRCRTGHPSLETIWSLHPLTIPAS 281



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 11/100 (11%)

Query: 7   VARQCLTDEXXXXXXXXXXXXXXXSHAQTTSLHAVSALLALPSSILRDACARARNSPCSS 66
             +Q LT E                HAQ T LH  + +LA  + +LR AC ++ + P   
Sbjct: 7   TVQQALTAEAAGVVKQAVTLARRRGHAQVTPLHVANTMLAATNGLLRTACLQSHSHP--- 63

Query: 67  RLQFRALELCVGVSLDRLSSSKT-------LEEPPISNSL 99
            LQ +ALELC  V+L+RL +S +        + P ISN+L
Sbjct: 64  -LQCKALELCFNVALNRLPASTSSPMLGPHSQHPSISNAL 102