Jatropha Genome Database

JcCA0291601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0291601.10 + phase: 0 
         (463 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017760001 assembled CDS                                       729   0.0  
GSVIVT01027978001 assembled CDS                                       355   3e-98
GSVIVT01007963001 assembled CDS                                       342   2e-94
GSVIVT01006024001 assembled CDS                                        60   3e-09

>GSVIVT01017760001 assembled CDS
          Length = 427

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/459 (77%), Positives = 375/459 (81%), Gaps = 51/459 (11%)

Query: 1   MLERCLGTHRVLRIQRAIRHAKVTLFCLFMTVVVLRGTIGAGKFGTPEQDFNDLRDRFYA 60
           ML+ C G  RV ++QRA RH K+TL CL MTVVVLRGTIGAG                  
Sbjct: 1   MLDWCFGARRVRQMQRAFRHGKITLMCLLMTVVVLRGTIGAGN----------------- 43

Query: 61  SRKHAEPHRVLVEAQVATESAQSSTXXXXXXXXXXXYATFDLNKILVDEGEEEKRDPNKP 120
                                               YATFD++K+ VDEGE+EK DPNKP
Sbjct: 44  ----------------------------------NNYATFDISKLTVDEGEDEKPDPNKP 69

Query: 121 YSLGPKISDWDEQRAEWLRXXXXXXXXXXXXXXRVLLVTGSSPKPCENPVGDHYLLKSIK 180
           YSLGPKISDWDEQRAEWLR              RVLLVTGSSPKPCENPVGDHYLLK+IK
Sbjct: 70  YSLGPKISDWDEQRAEWLRKNPNFPNFIGPNKPRVLLVTGSSPKPCENPVGDHYLLKAIK 129

Query: 181 NKIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEIEFLWWMDSDAMFTDMA 240
           NKIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEIEFLWWMDSDAMFTDMA
Sbjct: 130 NKIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEIEFLWWMDSDAMFTDMA 189

Query: 241 FEVPWERYKDSNFVMHGWNEMVYDQKNWIGLNTGSFLLRNGQWALDILDAWAPMGPKGKI 300
           FEVPWERYKD NFVMHGWNEMVYDQKNWIGLNTGSFLLRN QWALDILDAWAPMGPKGKI
Sbjct: 190 FEVPWERYKDHNFVMHGWNEMVYDQKNWIGLNTGSFLLRNCQWALDILDAWAPMGPKGKI 249

Query: 301 RDEAGKVLTRELKDRPVFEADDQSAMVYLLATQRDKWGDKVYLESAYYLHGYWGILVDRY 360
           R EAGK+LTRELKDRPVFEADDQSAMVYLLATQRD WGDKVYLESAYYLHGYWGILVDRY
Sbjct: 250 RTEAGKILTRELKDRPVFEADDQSAMVYLLATQRDNWGDKVYLESAYYLHGYWGILVDRY 309

Query: 361 EEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQMYGF 420
           EEMI+N+HPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQ+YGF
Sbjct: 310 EEMIKNHHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQIYGF 369

Query: 421 THKSLASRKVKRVRNESSNPLEVKDELGLLHPAFKAVKL 459
           THKSLASR+VKR RN++SNPLEVKD+LGLLHPAFKAVK+
Sbjct: 370 THKSLASRRVKRTRNDTSNPLEVKDDLGLLHPAFKAVKV 408


>GSVIVT01027978001 assembled CDS
          Length = 382

 Score =  355 bits (910), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 187/300 (62%), Positives = 201/300 (67%), Gaps = 59/300 (19%)

Query: 3   ERCLGTHRVLRIQRAIRHAKVTLFCLFMTVVVLRGTIGAGKFGTPEQDFNDLRDRFYASR 62
           +RCLG  R  +I RA+RH KVT+ CL MT+VVLRGTIGAGKFGTPEQDF           
Sbjct: 38  KRCLGARRARQIHRALRHFKVTILCLVMTIVVLRGTIGAGKFGTPEQDF----------- 86

Query: 63  KHAEPHRVLVEAQVATESAQSSTXXXXXXXXXXXYATFDLNKILVDEGEE-EKRDPNKPY 121
                                                     +LVDE ++ EK DP KPY
Sbjct: 87  ------------------------------------------LLVDEEDDSEKPDPKKPY 104

Query: 122 SLGPKISDWDEQRAEWLRXXXXXXXXXXXXXXRVLLVTGSSPKPCENPVGDHYLLKSIKN 181
           SLGPKISDWDEQR+ WL               RVLLVTGSSPKPCENPVGDHYLLKSIKN
Sbjct: 105 SLGPKISDWDEQRSTWLEQNPNFPNFIGPNKPRVLLVTGSSPKPCENPVGDHYLLKSIKN 164

Query: 182 KIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEIEFLWWMDSDAMFTDMAF 241
           KIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPE+EFLWWMDSDAMFTDMAF
Sbjct: 165 KIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAF 224

Query: 242 EVPWERYKDSNFVMHGWNEMVYDQKNWIGLNTGSFLLRNGQWALDILDAWAPMGPKGKIR 301
           E+PWERYKD NFVMHGWNEMVYDQKNWIGLNTGS  L+     L I   W     + +IR
Sbjct: 225 ELPWERYKDYNFVMHGWNEMVYDQKNWIGLNTGSQFLK-----LMISQQWCTFWLRRRIR 279



 Score =  202 bits (513), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 99/104 (95%)

Query: 359 RYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQMY 418
           R  EMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQ+LQ+Y
Sbjct: 279 RGAEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQVLQIY 338

Query: 419 GFTHKSLASRKVKRVRNESSNPLEVKDELGLLHPAFKAVKLPTS 462
           GFTHKSL SR+VKR RN+++NPLEVKDELGLLHPAFKAVK+ +S
Sbjct: 339 GFTHKSLGSRRVKRTRNDTNNPLEVKDELGLLHPAFKAVKVSSS 382


>GSVIVT01007963001 assembled CDS
          Length = 294

 Score =  342 bits (877), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 152/245 (62%), Positives = 190/245 (77%), Gaps = 22/245 (8%)

Query: 201 DAEMAGFWAKLPLIRKLLLSHPEIEFLWWMDSDAMFTDMAFEVPWERYKDSNFVMHGWNE 260
           D   AG+WAKLPLIR+L+LSHPE+E++WWMDSDA+FTDM FE+P  +Y + N V+HG+ +
Sbjct: 67  DGTEAGYWAKLPLIRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLSKYDNYNLVVHGYPD 126

Query: 261 MVYDQKNWIGLNTGSFLLRNGQWALDILDAWAPMGPKGKIRDEAGKVLTRELKDRPVFEA 320
           ++++QK+WI LNTGSFL RN QW+LD+LDAWAPMGPKG IRDEAGK+LT  LK RP FEA
Sbjct: 127 LMFNQKSWIALNTGSFLFRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTANLKGRPAFEA 186

Query: 321 DDQSAMVYLLATQRDKWGDKVYLESAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVT 380
           DDQSA++YLL +++D+W DK                      MIE YHPGLGD RWP VT
Sbjct: 187 DDQSALIYLLISKKDEWMDK----------------------MIEKYHPGLGDERWPFVT 224

Query: 381 HFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQMYGFTHKSLASRKVKRVRNESSNP 440
           HFVGCKPCG +GDYPVERCL+ M+RAFNF DNQ+L++YGF H+ L S K+KR+RNE++ P
Sbjct: 225 HFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLKLYGFRHRGLLSPKIKRIRNETATP 284

Query: 441 LEVKD 445
           LE  D
Sbjct: 285 LEFND 289


>GSVIVT01006024001 assembled CDS
          Length = 267

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 358 DRYEEMIENYHPGLGDHRW----PLVTHFVGCKPC-GKFGD-YPVERCLKQMDRAFNFGD 411
           + Y E  E Y    G+ R+    P +THF GC+PC GK    Y  E C   M +A NF D
Sbjct: 149 ESYAEQREPYLKKAGNGRYSWRRPFITHFTGCQPCSGKHNQMYAGESCWNSMQKALNFAD 208

Query: 412 NQILQMYGFTHKSL 425
           NQ+L+ +GF H  L
Sbjct: 209 NQVLRNFGFVHPDL 222