Jatropha Genome Database

JcCA0291241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0291241.10 - phase: 1 /partial
         (115 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033907001 assembled CDS                                       137   1e-33
GSVIVT01008852001 assembled CDS                                       106   2e-24
GSVIVT01038665001 assembled CDS                                       106   2e-24
GSVIVT01016901001 assembled CDS                                       104   8e-24
GSVIVT01020159001 assembled CDS                                       104   8e-24
GSVIVT01015256001 assembled CDS                                       100   1e-22

>GSVIVT01033907001 assembled CDS
          Length = 814

 Score =  137 bits (344), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 72/78 (92%)

Query: 25  AREVKFLEWIKGIRRRIHEHPELGFEEHRTSQLIRTELDSLGIKYKWPVAKTGVVASIGS 84
           ARE   LEWI+G+RR IHE+PELGFEE+RTSQLIR EL+SLGI+Y+WPVAKTGVVA+IGS
Sbjct: 406 AREADLLEWIRGVRRSIHEYPELGFEEYRTSQLIRDELNSLGIRYEWPVAKTGVVATIGS 465

Query: 85  GEKPVFALRADMDALPLQ 102
           G +P+FALRADMDALPLQ
Sbjct: 466 GAQPIFALRADMDALPLQ 483



 Score =  124 bits (310), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 66/69 (95%)

Query: 34  IKGIRRRIHEHPELGFEEHRTSQLIRTELDSLGIKYKWPVAKTGVVASIGSGEKPVFALR 93
           ++G+RR+IH++PELGFEEH+TS+LIR EL+SLGI YKWPVAKTGVVASIGSG++P FALR
Sbjct: 1   MRGVRRKIHQYPELGFEEHKTSELIRAELNSLGIGYKWPVAKTGVVASIGSGDQPTFALR 60

Query: 94  ADMDALPLQ 102
           ADMDALPLQ
Sbjct: 61  ADMDALPLQ 69


>GSVIVT01008852001 assembled CDS
          Length = 487

 Score =  106 bits (264), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 63/78 (80%)

Query: 25  AREVKFLEWIKGIRRRIHEHPELGFEEHRTSQLIRTELDSLGIKYKWPVAKTGVVASIGS 84
           A+  + +EW+KGIRRRIHE+PEL FEE  TS+LIR ELD + I Y++P+AKTG+ A+IG+
Sbjct: 98  AKRPETVEWLKGIRRRIHENPELAFEEFNTSRLIRRELDQMDISYRFPLAKTGIRATIGT 157

Query: 85  GEKPVFALRADMDALPLQ 102
           G  P  A+RADMDALP+Q
Sbjct: 158 GGPPFVAVRADMDALPIQ 175


>GSVIVT01038665001 assembled CDS
          Length = 445

 Score =  106 bits (264), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 57/71 (80%)

Query: 32  EWIKGIRRRIHEHPELGFEEHRTSQLIRTELDSLGIKYKWPVAKTGVVASIGSGEKPVFA 91
           EW+  IRR+IHE+PEL FEE+ TS LIR ELD LGI Y  P+AKTG+VA IG+G  PV A
Sbjct: 300 EWLVSIRRKIHENPELKFEEYNTSALIRGELDKLGISYTHPLAKTGIVAEIGTGSGPVVA 359

Query: 92  LRADMDALPLQ 102
           LRADMDALPLQ
Sbjct: 360 LRADMDALPLQ 370


>GSVIVT01016901001 assembled CDS
          Length = 441

 Score =  104 bits (260), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 63/78 (80%)

Query: 25  AREVKFLEWIKGIRRRIHEHPELGFEEHRTSQLIRTELDSLGIKYKWPVAKTGVVASIGS 84
           AR+ + ++W+ G+RR+IHE+PELGFEE  TS+L+R ELD +GI YK+PVA TGV+  +G+
Sbjct: 39  ARKQEVVDWLVGVRRKIHENPELGFEEVETSKLVRAELDKMGIPYKYPVAVTGVLGFVGT 98

Query: 85  GEKPVFALRADMDALPLQ 102
           GE P  A+RADMDAL +Q
Sbjct: 99  GEPPFVAIRADMDALAMQ 116


>GSVIVT01020159001 assembled CDS
          Length = 830

 Score =  104 bits (260), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 58/72 (80%)

Query: 31  LEWIKGIRRRIHEHPELGFEEHRTSQLIRTELDSLGIKYKWPVAKTGVVASIGSGEKPVF 90
           + W+K IRR IHE+PEL +EE  TS LIR EL+ LGI Y+WP+A TGVVA+IGSG +P  
Sbjct: 410 VNWMKRIRREIHENPELAYEEFATSALIRRELEQLGIGYRWPIAGTGVVATIGSGSQPFV 469

Query: 91  ALRADMDALPLQ 102
           ALR+DMDALP+Q
Sbjct: 470 ALRSDMDALPIQ 481



 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 56/69 (81%)

Query: 34  IKGIRRRIHEHPELGFEEHRTSQLIRTELDSLGIKYKWPVAKTGVVASIGSGEKPVFALR 93
           +K IRR IHE+PEL +EE  TS +IR EL+ LG+ Y+WPVA+TGVVA+IGSG  P  ALR
Sbjct: 1   MKRIRREIHENPELAYEEFATSAVIRRELEELGVGYRWPVARTGVVATIGSGSPPFVALR 60

Query: 94  ADMDALPLQ 102
           ADMDALP+Q
Sbjct: 61  ADMDALPIQ 69


>GSVIVT01015256001 assembled CDS
          Length = 406

 Score =  100 bits (249), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 55/67 (82%)

Query: 36  GIRRRIHEHPELGFEEHRTSQLIRTELDSLGIKYKWPVAKTGVVASIGSGEKPVFALRAD 95
           GIRR IHE+PELGFEE  TS+LIRTELD + I Y++PVA TGVV  IG+GE P  A+RAD
Sbjct: 3   GIRRIIHENPELGFEEFETSKLIRTELDKMDIPYRFPVAVTGVVGFIGTGEPPFVAIRAD 62

Query: 96  MDALPLQ 102
           MDALP+Q
Sbjct: 63  MDALPMQ 69