Jatropha Genome Database

JcCA0290151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0290151.10 - phase: 2 /partial
         (329 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010284001 assembled CDS                                        63   2e-10

>GSVIVT01010284001 assembled CDS
          Length = 490

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 94/240 (39%), Gaps = 58/240 (24%)

Query: 2   TLGTHLYGNNHMSLGLSQVGSQIPPLQDQNHHHPSTNMLRLGGAGAAKFEHIISPPPPNS 61
           T+G+HLYG+++M LGLSQ   +     DQ   H        GG                 
Sbjct: 208 TIGSHLYGSSNMGLGLSQEFHE-----DQQSQH--------GGL---------------- 238

Query: 62  STFFMSDSNQTSFPSKPLHGLMQLPDLQXXXXXXXXXXXXXXXXXXXXXXPNRMSGNDNG 121
                         +KP HGL+ LPDLQ                         +S   N 
Sbjct: 239 ------------LTNKPFHGLVHLPDLQNNTNNPSSAANLFN-----------LSFFSNS 275

Query: 122 ANSSTGTATXXXXXXXXXXXXXXXXXXMDDHVSSTAGIHSLYSNSMQQENITPHMSATAL 181
           +N+++   +                  + D +SS  G+ SL+S S+Q EN   HMSATAL
Sbjct: 276 SNTNS-MLSNTNNANNSTNMPSSGFNIIGDQISS--GVPSLFSTSLQNENAVSHMSATAL 332

Query: 182 LQKAAQMGXXXXXXXXXXXXXXXXXXXXXXXXKADRPPLVSTNFGNAEIESQNQLQGLMN 241
           LQKAAQMG                        K+DR PLV  NFG    E+++ LQ LMN
Sbjct: 333 LQKAAQMG--STSSNNSASLLRGFAGSSSANAKSDR-PLVGPNFGGVFGENESHLQDLMN 389