Jatropha Genome Database

JcCA0289411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0289411.10 - phase: 0 
         (547 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002029001 assembled CDS                                       882   0.0  

>GSVIVT01002029001 assembled CDS
          Length = 792

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/544 (79%), Positives = 461/544 (84%), Gaps = 2/544 (0%)

Query: 4   SLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETL 63
           SLDRIKCRLLEG NAQEVRAMVLDMQARLLLDMLGKGIESAL+ PSALVPEPWQA+GETL
Sbjct: 251 SLDRIKCRLLEGINAQEVRAMVLDMQARLLLDMLGKGIESALMKPSALVPEPWQATGETL 310

Query: 64  SSIDPEAMAVEPNLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRX 123
           S IDPE MAV+P LV SIQAYVD+VLDLASHFITRLRRYASFCRTLASHAVTAGTGSNR 
Sbjct: 311 SGIDPEEMAVDPALVFSIQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRS 370

Query: 124 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVQGAIAKISSTSDGVSNSTPNPISGP 183
                                           AWVQGAIAKISST+DGV NSTPNPI+GP
Sbjct: 371 AVASPTQSSASPATSQGGQSGTTSSTGSTQMQAWVQGAIAKISSTTDGVPNSTPNPINGP 430

Query: 184 SSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFFRRTQQLPRFIGGAQRNPDS 243
            SF+PISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFC+FFRRTQ LPR IG AQRN D+
Sbjct: 431 PSFIPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQ-LPRVIGVAQRNADT 489

Query: 244 NMQKPQPGAPGKVEEGNSVSSKLAPTMVRSDEGQAARGAQLVPGVKGAEDGPAGRSRLGS 303
           NM KPQ     KVEE ++VS+KLA  M RS+EGQ AR    + G KGAE+GP GRSRLGS
Sbjct: 490 NMHKPQATGTSKVEENSTVSNKLASAMARSEEGQVARANHAINGAKGAEEGPTGRSRLGS 549

Query: 304 GNAGQGYTFEEVRVLFLILMDLCRRTSALAHPLPVSQVGSGNIQVRLHYIDGNYTVLPEV 363
           GNAGQGYTFEEV+VLFLILMDLCRRT+AL HPLP+SQVGS NIQVRLHYIDG+YTVLPEV
Sbjct: 550 GNAGQGYTFEEVKVLFLILMDLCRRTAALQHPLPISQVGSNNIQVRLHYIDGSYTVLPEV 609

Query: 364 VEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDLEDTSSADDTP 423
           VEASLGPHMQNMPRPRGADAAGLLLRELELHPP+EEWHRRNMFGGPWSD ED  S DDTP
Sbjct: 610 VEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDMGSVDDTP 669

Query: 424 RQSSYTDSLDFSSLENCDVYCGVNGLWPKKRRMSERDAAFGLNTSVGLGAYLGIMGSRRD 483
           + S+Y D L+ +S EN D Y G  GLWP+KRR+SERDAAFGLNTSVGLGAYLGIMGSRRD
Sbjct: 670 KLSTYADPLESNSFENNDTYYGARGLWPRKRRLSERDAAFGLNTSVGLGAYLGIMGSRRD 729

Query: 484 VVTAVWKTGLEGVWYKCIRCLRQTSAFASPGATSPPNQNEREAWWISRWAYGCPMCGGTW 543
           VVTAVWKTGLEGVWYKCIRCLRQTSAFA+  AT+ PNQNERE WWISRWAYGCPMCGGTW
Sbjct: 730 VVTAVWKTGLEGVWYKCIRCLRQTSAFAA-DATNQPNQNEREMWWISRWAYGCPMCGGTW 788

Query: 544 VRVV 547
           VRVV
Sbjct: 789 VRVV 792