Jatropha Genome Database

JcCA0289001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0289001.10 + phase: 0 /partial
         (190 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012228001 assembled CDS                                       337   1e-93

>GSVIVT01012228001 assembled CDS
          Length = 645

 Score =  337 bits (865), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 162/187 (86%), Positives = 177/187 (94%)

Query: 1   DLNIGIALWLAASGDGWVYKGMNNNADENQQRLRYKSKARIVLVGSGADEQCAGYGRHRT 60
           DLNIGIALWLAA GDGWV++ +    ++N QR++YKSKARI+LVGSGADEQCAGYGRH+T
Sbjct: 452 DLNIGIALWLAAGGDGWVHEEIGEIDNDNYQRVKYKSKARILLVGSGADEQCAGYGRHKT 511

Query: 61  KYRCGSWLGLHEEMKLDMQRIWKRNMGRDDRCIADNGKEARFPFLDEDVIRTLLDIPLWK 120
           KYR GSWLGL+EEMKLDMQRIWKRN+GRDDRCIADNGKEARFPFLDEDVIRTLLDIPLW+
Sbjct: 512 KYRSGSWLGLNEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRTLLDIPLWE 571

Query: 121 VANLNQPSGTGDKKILREVAWMLGLHEAAILPKRAIQFGSRIARESNRKNFGSNRAANQA 180
           VANL+QPSGTGDKKILREVA MLG++EAA LPKRAIQFGSRIARESNRKNFGSNRAANQA
Sbjct: 572 VANLDQPSGTGDKKILREVAQMLGIYEAATLPKRAIQFGSRIARESNRKNFGSNRAANQA 631

Query: 181 SAGSVVI 187
           SAGSVVI
Sbjct: 632 SAGSVVI 638