Jatropha Genome Database

JcCA0288061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0288061.20 + phase: 0 
         (209 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018102001 assembled CDS                                       251   1e-67

>GSVIVT01018102001 assembled CDS
          Length = 234

 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 130/205 (63%), Positives = 157/205 (76%), Gaps = 18/205 (8%)

Query: 1   MFGMSYGEIFLLLGATAALIGPKDLPVIARTAGRLAGRAIGYVQLARGQFESVMQQSQAR 60
           M G+SYGE FLL+GATAAL+GPKDLP+IARTAGRLAGRAIGYVQLARGQFE+VMQQSQAR
Sbjct: 1   MLGISYGEFFLLIGATAALVGPKDLPMIARTAGRLAGRAIGYVQLARGQFENVMQQSQAR 60

Query: 61  QVHKELQDTMAQLEAIRHEIRSISILSPGPLTRRLVDN-VDNTSGSNANGICENQDVENT 119
           QVHKELQDTMAQL+AIR+EIRS+S+++PGP+TRRL++N ++ TS SN N + E Q+ +  
Sbjct: 61  QVHKELQDTMAQLDAIRYEIRSLSLMNPGPMTRRLMENSLETTSHSNDNAVPEKQEEQKA 120

Query: 120 LKVTISQPSSEQRIGGSIATSAFSKASDSCSMHSQATVYARLAEAAAQKTSLLDSGADAE 179
             V  S                  K S S ++HSQAT +A+LAE+AAQKT  L S A+ E
Sbjct: 121 KNVDQS-----------------FKTSGSINLHSQATAFAKLAESAAQKTGPLMSSAEME 163

Query: 180 KLIDDAGLPNVLPVSAESAGMLPKR 204
           KL D+ GL  VLPVSAESAG+LP R
Sbjct: 164 KLDDETGLLAVLPVSAESAGLLPNR 188