Jatropha Genome Database

JcCA0288061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0288061.10 - phase: 0 
         (221 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000716001 assembled CDS                                       270   5e-73

>GSVIVT01000716001 assembled CDS
          Length = 273

 Score =  270 bits (689), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 127/150 (84%), Positives = 141/150 (94%)

Query: 51  GLAETFSNLKKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGP 110
           GL+ETF  L+K+G+VA IPYITAGDPDLSTTAEALKVLDSCGSDIIELG+PYSDPLADGP
Sbjct: 11  GLSETFDKLRKQGQVALIPYITAGDPDLSTTAEALKVLDSCGSDIIELGLPYSDPLADGP 70

Query: 111 VIQAAATRSLAKGTNFDAVISMLKEVIPQLSSPVALFTYYNPILKRGIEKFMSTVKDVGV 170
           VIQAAATRSLA+GTN +AVISMLKEV+PQLS PVALF+YYNPILKRGI KFM+ +KDVGV
Sbjct: 71  VIQAAATRSLARGTNLNAVISMLKEVVPQLSCPVALFSYYNPILKRGIGKFMTIIKDVGV 130

Query: 171 HGLVVPDVPLEETELLRKEAVKNNIELVCL 200
           HGLVVPDVPLEETE+LR E++KNNIELV L
Sbjct: 131 HGLVVPDVPLEETEILRMESIKNNIELVLL 160