Jatropha Genome Database

JcCA0287971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0287971.10 + phase: 0 
         (218 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035334001 assembled CDS                                       225   1e-59
GSVIVT01015258001 assembled CDS                                       210   4e-55
GSVIVT01016913001 assembled CDS                                       204   4e-53
GSVIVT01034626001 assembled CDS                                        50   1e-06
GSVIVT01033955001 assembled CDS                                        49   3e-06

>GSVIVT01035334001 assembled CDS
          Length = 216

 Score =  225 bits (574), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/148 (77%), Positives = 117/148 (79%)

Query: 1   MFNRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRARNKRAAI 60
           MF RLFGKPKQE NALTTLD                             FTRA+NKRAAI
Sbjct: 1   MFTRLFGKPKQEANALTTLDKLNETLEMLEKKEGVLLKKAAAEVEKAKEFTRAKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNID 120
           QCLKRKRLYEQQIEQLGNFQLRIHDQMI+LEGAKATTETVDALRTGA+AMKAMQKATNID
Sbjct: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMILLEGAKATTETVDALRTGASAMKAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALATPIG 148
           DVDKTMDEINEQTENMKQIQEALATPIG
Sbjct: 121 DVDKTMDEINEQTENMKQIQEALATPIG 148


>GSVIVT01015258001 assembled CDS
          Length = 218

 Score =  210 bits (535), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 128/203 (63%)

Query: 1   MFNRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRARNKRAAI 60
           MF R+FGKPKQE NALTTLD                             FTRA+NKRAAI
Sbjct: 1   MFTRIFGKPKQEANALTTLDKLNETLEMLEKKEKVLLKKAAAEVEKAKEFTRAKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNID 120
           QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNID
Sbjct: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALATPIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           DVD+TMDEINEQTENMKQIQEAL+TPIG                                
Sbjct: 121 DVDQTMDEINEQTENMKQIQEALSTPIGSAADFDEDELEAELEELEGFELEEQLLQPATT 180

Query: 181 XXXXXXXXXXGRQPARPVPQKRT 203
                     GRQPAR  PQKRT
Sbjct: 181 APAAPVHVPAGRQPARAAPQKRT 203


>GSVIVT01016913001 assembled CDS
          Length = 205

 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 113/150 (75%), Gaps = 2/150 (1%)

Query: 1   MFNRLF--GKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRARNKRA 58
           MF+R+F  GK + +TNA+ TLD                             +T+A+NKRA
Sbjct: 1   MFSRVFRKGKEQSQTNAVATLDKLNETLEMLEKKERVLIKKASAEVEKAKEYTKAKNKRA 60

Query: 59  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATN 118
           AIQCLKRKRLYEQQIEQLGNFQLRIHDQMI+LEGAKATTETVDALRTGAAAMK M K TN
Sbjct: 61  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMILLEGAKATTETVDALRTGAAAMKTMHKTTN 120

Query: 119 IDDVDKTMDEINEQTENMKQIQEALATPIG 148
           IDD+DKTMDEINEQTENMKQIQEAL+TPIG
Sbjct: 121 IDDLDKTMDEINEQTENMKQIQEALSTPIG 150


>GSVIVT01034626001 assembled CDS
          Length = 237

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%)

Query: 56  KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQK 115
           K  A++ LK+KR+YE Q + L N    +       EG K   +T+ AL++    +K M K
Sbjct: 62  KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFAAEGIKDAQQTMSALKSANKELKGMMK 121

Query: 116 ATNIDDVDKTMDEINEQTENMKQIQEALA 144
              I+DVD   DE+ +  +   +IQE+L 
Sbjct: 122 TVKIEDVDNLQDEMMDLMDISNEIQESLG 150


>GSVIVT01033955001 assembled CDS
          Length = 237

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%)

Query: 59  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATN 118
           A++ LK+KR+YE Q + L N    +       EG K   +T+ AL+     +K M K   
Sbjct: 65  AMRVLKQKRMYEGQRDMLYNQTFNLDQVSFAAEGIKDAQQTMTALKAANKELKGMMKTVK 124

Query: 119 IDDVDKTMDEINEQTENMKQIQEALA 144
           I+D+D   DE+ +  +   +IQE+L 
Sbjct: 125 IEDIDSMQDEMMDLMDVSSEIQESLG 150