Jatropha Genome Database

JcCA0287821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0287821.10 + phase: 2 /TE
         (261 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009548001 assembled CDS                                       155   1e-38
GSVIVT01000641001 assembled CDS                                        78   3e-15
GSVIVT01012382001 assembled CDS                                        74   7e-14
GSVIVT01028343001 assembled CDS                                        62   4e-10

>GSVIVT01009548001 assembled CDS
          Length = 849

 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 101/140 (72%)

Query: 114 DSRKSTFGYLFLLTRGVIS*KSGK*SVIATSTMEAEFVACFEATVHALWLRNFVSGLGIV 173
           D  KST GY+F+LT G IS KS K S+IA STM A+FVAC+ A+   +WLR  +S L +V
Sbjct: 674 DDCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACYGASSQVVWLRKLISELQVV 733

Query: 174 DSIARSLIIFCDNSAAVFFSKNNKYSKGAKHMDLKYLSVKEEVHKHKVSIEHIGTDLMIV 233
           DSI R ++I+CDN+A VF+SKNNK S  +KHM++KYL VK+ V K  + I+HI T+ M+ 
Sbjct: 734 DSIFRPIVIYCDNNATVFYSKNNKISTSSKHMEIKYLIVKDLVKKEDIVIKHIRTESMLA 793

Query: 234 DPLTKGLPPKIFTGHVDRMG 253
           DPLTKGL P +F  HV  MG
Sbjct: 794 DPLTKGLKPIMFKEHVVNMG 813


>GSVIVT01000641001 assembled CDS
          Length = 947

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 2/132 (1%)

Query: 114 DSRKSTFGYLFLLTRGVIS*KSGK*SVIATSTMEAEFVACFEATVHALWLRNFVSGLGIV 173
           D+R+ST GY+F+L  G +S  S K  ++  ST EAEFVA       A+WLR  +  L + 
Sbjct: 313 DNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFVAATVCACQAIWLRKILEELHLK 372

Query: 174 DSIARSLIIFCDNSAAVFFSKNNKYSKGAKHMDLKYLSVKEEVHKHKVSIEHIGTDLMIV 233
              A +  IFCDNS+ +  SKN      +KH+D+KY  +++  +   + + +  ++  + 
Sbjct: 373 QVGATT--IFCDNSSTIKLSKNPVLHGRSKHIDVKYYFLRDLSNDGVIDLVYCRSENQVA 430

Query: 234 DPLTKGLPPKIF 245
           D  TK L   +F
Sbjct: 431 DIFTKPLKLAVF 442


>GSVIVT01012382001 assembled CDS
          Length = 952

 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 75/141 (53%), Gaps = 2/141 (1%)

Query: 116 RKSTFGYLFLLTRGVIS*KSGK*SVIATSTMEAEFVACFEATVHALWLRNFVSGLGIVDS 175
           R+ST GY   +   ++S KS K  V+A S+ EAE+ A   A+   +WL+N ++ LG   S
Sbjct: 809 RRSTTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGF--S 866

Query: 176 IARSLIIFCDNSAAVFFSKNNKYSKGAKHMDLKYLSVKEEVHKHKVSIEHIGTDLMIVDP 235
               + +FCDN AA+  + N  + +  KH+++    ++++V    +   +I +   + D 
Sbjct: 867 PTSPMKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLADA 926

Query: 236 LTKGLPPKIFTGHVDRMGIID 256
            TK L   +F   + ++G ID
Sbjct: 927 FTKVLSSTVFHRLMFKLGSID 947


>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 116  RKSTFGYLFLLTRGVIS*KSGK*SVIATSTMEAEFVACFEATVHALWLRNFVSGLGIVDS 175
            R+ST GY   +   +IS KS K  V+A S+ EAE+ A   AT   +WLR+ +  L     
Sbjct: 1467 RRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGKD 1526

Query: 176  IARSLIIFCDNSAAVFFSKNNKYSKGAKHMDLKYLSVKEEVHKHKVSIEHIGTDLMIVDP 235
                LI  CDN AA+  + N  + +  KH+++    ++E++    V+   + ++  + D 
Sbjct: 1527 EQMKLI--CDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADI 1584

Query: 236  LTKGLP-PKI 244
             TK L  P+I
Sbjct: 1585 FTKSLRGPRI 1594