Jatropha Genome Database
- JcCA0287661.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0287661.20 + phase: 0
(367 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01013506001 assembled CDS 115 3e-26
GSVIVT01013538001 assembled CDS 107 1e-23
GSVIVT01030585001 assembled CDS 103 1e-22
GSVIVT01026027001 assembled CDS 100 9e-22
GSVIVT01031692001 assembled CDS 95 5e-20
GSVIVT01026026001 assembled CDS 82 4e-16
GSVIVT01031694001 assembled CDS 65 4e-11
GSVIVT01008137001 assembled CDS 57 2e-08
GSVIVT01031693001 assembled CDS 52 3e-07
>GSVIVT01013506001 assembled CDS
Length = 423
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 41/343 (11%)
Query: 6 EIIVDIFLKLPVKPLLRFRCLSKSMCSTIDDSDFIKAHLNRSIETNTHKKLILFGHTKTS 65
E ++DI L+LPVK ++RFRC+ KS C+ DD DFI HL R N++ +L LF H +S
Sbjct: 23 ENLIDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHL-RQASANSNGRL-LFKHLSSS 80
Query: 66 TVISGIYAVDLSDGLKESVKLDNSL--NHGRFSVIDCCSGLFLLLEPRIINSLNTVKLVL 123
IY++ + E +L+ + + ++ +GL L E S ++ L L
Sbjct: 81 E--QEIYSLRSNIAFAEVRRLEVPVPSKTDYYQIVGSSNGLICLTESNFKGSYLSLNLFL 138
Query: 124 WNPFTKRYKRLTDPPVESSSMFKPLQQYSYRYFDSFGLGYDAARNDHKVVRILY---EKP 180
WNP + ++ L P ++ PL G + ND+KVVRI+Y K
Sbjct: 139 WNPAIREFQTL--PKYHINNFTSPLMVV------GLGFAFHPVINDYKVVRIVYFMRNKT 190
Query: 181 KEVWIYSLRSDSWRKVED--WCQIALGVMGMFVNGVMYF------EGENLEN-IVSFDFA 231
E +YSLR+ SWRKV+ C I V F+NG +++ E +N +N I+SFD A
Sbjct: 191 SEADVYSLRTGSWRKVDANICCYIHSNVSRTFINGALHWLAGKKNEMDNTDNLILSFDMA 250
Query: 232 TEKFSIMPFPE-GYE---KSCSHLRVLEGRLCLC---TLGRHRTLDIYVGDKHEDGLTWS 284
+ F + P+ GY+ + C L +G L + + D++V +++ +W+
Sbjct: 251 KDVFKEIMLPDFGYDELIRKC--LADYKGSLSVLFYDAYHSNENCDVWVMEEYGVAKSWT 308
Query: 285 KLIKIPDYQTHTDHIRNLRPLCYSREGDKILLIEERDDFVWYD 327
K I I + P + G+ IL ++ F+ ++
Sbjct: 309 KHFTI------RHEIEIIIPFEFFDNGEAILQKKKSGGFISWN 345
>GSVIVT01013538001 assembled CDS
Length = 711
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 147/307 (47%), Gaps = 50/307 (16%)
Query: 3 LPPEIIVDIFLKLPVKPLLRFRCLSKSMCSTIDDSDFIKAHLNRSIETNTHKKLIL---F 59
+P I+VDI +LPVK LLRFRC+ K+ C+ I F++ HL + HK+ ++
Sbjct: 4 IPEVIMVDILSRLPVKSLLRFRCVCKAWCTLISHPQFVETHLRQQ-----HKRPVIGLVV 58
Query: 60 GHTKTSTVISGIYAVDLSDGL----KESVKLDNSLNHGRFSVIDCCSGLFLLLEPRIINS 115
H+ + AVDL L K + + +S N G V+DC G + L P+
Sbjct: 59 PHSVDDPLHKDDLAVDLELHLGIPNKRTTTVLDSCN-GLLCVVDCYYGFYSLKPPQ---- 113
Query: 116 LNTVKLVLWNPFTKRYKRLTDPPVESSSMFKPLQQYSYRYFDSFGLGYDAARNDHKVVRI 175
KL+LWNP T++ + P F Q Y +F YD +D+K+VRI
Sbjct: 114 ----KLILWNPSTRQCNHIPCP------SFVGYQNCMYSFF------YDPGSDDYKIVRI 157
Query: 176 ---LYEKPKEVWIYSLRSDSWRKVEDWCQIALGV-MGMFVNGVMY--------FEGENLE 223
L + + I++L+++ WR+VE+ +G + NG ++ + +
Sbjct: 158 FTFLGKDKTGIDIFTLKTNKWRRVEETHSSVIGYWSATYFNGNLHWLAFRYGGYGEDERS 217
Query: 224 NIVSFDFATEKFSIMPFPEGYEKSCSHLRVLEGRLCLCTLGRHRTLDIYVGDKHEDGLTW 283
++V+F EKF M P +++ LRVL G CLC G + T D +V +++ +W
Sbjct: 218 SMVAFSLREEKFQEMELPS--QRAVFGLRVLGG--CLCVDGLY-TNDKWVMEEYGIKESW 272
Query: 284 SKLIKIP 290
LI IP
Sbjct: 273 KSLIAIP 279
>GSVIVT01030585001 assembled CDS
Length = 423
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 144/306 (47%), Gaps = 41/306 (13%)
Query: 6 EIIVDIFLKLPVKPLLRFRCLSKSMCSTIDDSDFIKAHLNRSIETNTHKKLILFGHTKTS 65
E +VD+ L+LPVK ++RF+C+ +S + +D DFI +L R+I N L+ + +
Sbjct: 24 ENLVDVLLRLPVKSIIRFKCVCQSWQTLFNDPDFINMNLRRAITHNNCCMLLKYLSSSEE 83
Query: 66 TVISGIYAVDLSDGLKESVKLDNSLNHGRFSVIDCCSGLFLLLEPRIINSLNTVKLVLWN 125
V S D ++ + V + + ++ + ++ +GL L E S TV LWN
Sbjct: 84 EVYSLRCDKDFAEFRRLQVPVPSKTDY--YHIVGSSNGLICLTESNNKGSYVTVDTFLWN 141
Query: 126 PFTKRYKRLTDPPVESSSMFKPLQQY-------SYRYFDSFGLGYDAARNDHKVVRILY- 177
P ++ +KPL +Y S G + +D+KVVRI+Y
Sbjct: 142 P-------------SVTAQWKPLPKYLINNMMTSPFMVVGLGFAFHPQIDDYKVVRIVYF 188
Query: 178 --EKPKEVWIYSLRSDSWRKVED--WCQIALGVMGMFVNGVMYF--------EGENLENI 225
K EV +YSL+ D+W+ ++ C I V FVNG +++ G++ + I
Sbjct: 189 LKSKTYEVHVYSLKQDAWKNIDAKVHCHIHDTVSRTFVNGALHWLAAKKNQGRGKSDDLI 248
Query: 226 VSFDFATEKFSIMPFPE-GYEKSCSH--LRVLEGRLCLCTLGRHR---TLDIYVGDKHED 279
+SFD + M PE GY++S + L +G L + HR DI+V D++
Sbjct: 249 LSFDMVEDNLREMILPEFGYDESSTQKCLADYKGLLSVLVYNAHRCNDNCDIWVMDEYGV 308
Query: 280 GLTWSK 285
+W+K
Sbjct: 309 ASSWTK 314
>GSVIVT01026027001 assembled CDS
Length = 372
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 172/368 (46%), Gaps = 68/368 (18%)
Query: 3 LPPEIIVDIFLKLPVKPLLRFRCLSKSMCSTIDDSDFIKAHLNRSIETNTHKKLILFGHT 62
+P EII++I LPVK L+RF+C+SKS I D DF K L + + G
Sbjct: 26 IPDEIILEILCLLPVKSLMRFKCVSKSWREMISDPDFEKKQLAVAARDS--------GEV 77
Query: 63 KTSTVISGIYAVDLSDGLKESVKLDNSLNHGRFSVIDCCSGLFLLLEPRIINSLNTVK-- 120
S +I S+KL + C L EP + +S+N
Sbjct: 78 YNSRLIMHY----------PSMKLKS------------CPLSCLFYEP-VGHSVNHEYPE 114
Query: 121 ---LVLWNPFTKRYKRLTDPPVESSSMFKPLQQYSYRYFDSFGLGYDAARNDHKVVRI-- 175
+ +WNP T+ ++RL PP+ F + ++G GYD+ +D+KV R+
Sbjct: 115 NDIIFVWNPSTREFRRL--PPISFMQCF---------HLVAYGFGYDSIADDYKVTRVGC 163
Query: 176 -----LYEKPKEVWIYSLRSDSWRKVEDW-CQIALGVMGMFVNGVMYFEG----ENLE-N 224
YE +V ++SLR + WRK+E++ C + G+ VNG + F G EN +
Sbjct: 164 YCIGRYYEY--QVRVFSLRGNVWRKIENFPCYLFTDEPGIHVNGSINFGGVGDSENYYWS 221
Query: 225 IVSFDFATEKFSIMPFPEGYEKSCSHL-RVLEGRLCLCTLGRHRTLDIYVGDKHEDGLTW 283
+V D A+E + ++P P+ + + + L GR C +D++V +++ +W
Sbjct: 222 VVGLDLASESYRMVPLPDCADPNVKPMIMALGGRFCT-IFDNDEAVDVWVMEQYGVKKSW 280
Query: 284 SKLIKIPDYQTHTDHIRNLRPLCYSREGDKILLIEERDDFVWYDLNKKTTESIQTVCDIK 343
+KL+ +P Y + +P+ + R+G +L+E V Y++++ + +I T+ +
Sbjct: 281 NKLVTVP-YFPDPMTVDCTKPVFFLRDG--AILMEFYGLLVLYNIDRDES-TIPTIYGTR 336
Query: 344 KHYRLKFF 351
+ ++ +
Sbjct: 337 HCHEVEVY 344
>GSVIVT01031692001 assembled CDS
Length = 357
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 40/302 (13%)
Query: 3 LPPEIIVDIFLKLPVKPLLRFRCLSKSMCSTIDDSDFIKAHLNRSIETNTHKKLILFGHT 62
LP II +I L+LPVK L+R RC+ K+ + I F+K+HL R +T + +
Sbjct: 4 LPLHIIENILLRLPVKSLIRSRCVCKAWRTLISHPHFVKSHL-RLPQTQARTQFCTLNYG 62
Query: 63 KTST---VISGIYAVD---LSDGLKESVKLDNSLNHGRFS----VIDCCSGLFLLLEPRI 112
+ ++ G D SD ++ D + G F ++D C GL L++ +
Sbjct: 63 EPGDNYYLVVGASTKDCEAFSDDNGGALAFDYLFDIGGFKYEVVLLDSCDGLLCLVD--L 120
Query: 113 INSLNTVKLVLWNPFTKRYKRLTDPPVESSSMFKPLQQYSYRYFDSFGLGYDAARNDHKV 172
N K+VLWNP T++ +L P + G GYD+ +D+KV
Sbjct: 121 AN-----KIVLWNPSTRQCNQL------------PPNPNVLDFLGCHGFGYDSFADDYKV 163
Query: 173 VRILYEKPK---EVWIYSLRSDSWRKVED-----WCQIALGVMGMFVNGVMYFEGENLEN 224
+ P V ++SL+S+ W+++++ ++ V+ ++ V Y +
Sbjct: 164 FLVSMLNPNFETVVDVFSLKSNKWKRIQEKHHTRAARMCATVLHGALHWVAYDPILGFDT 223
Query: 225 IVSFDFATEKFSIMPFPEGYEKSCSHLRVLEGRLCLCTLGRHRTLDIYVGDKHEDGLTWS 284
I++FDF E+F M P E+ LRV+ G CLC G ++V ++ +WS
Sbjct: 224 IMAFDFEKERFREMAIPREEEELYVKLRVVGG--CLCVHGSKDPSKMWVMKEYGVDTSWS 281
Query: 285 KL 286
K+
Sbjct: 282 KM 283
>GSVIVT01026026001 assembled CDS
Length = 243
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 31/229 (13%)
Query: 121 LVLWNPFTKRYKRLTDPPVESSSMFKPLQQYSYRYFDSFGLGYDAARNDHKVVRIL---- 176
+ +WNP K KRL P E +F Y S+ GYD+ +D+KVVR++
Sbjct: 6 IFVWNPSIKESKRLPSKPFEQ--LF---------YLVSYAFGYDSITDDYKVVRLVCCSI 54
Query: 177 ---YEKPKEVWIYSLRSDSWRKVEDWCQIAL-GVMGMFVNGVMYFEGENLEN-----IVS 227
YE EV +SLRS++WRK+ + G VNG + + +N I S
Sbjct: 55 NDSYEYHVEV--FSLRSNAWRKIRSFPYFLFTDEAGKHVNGSINWAVSRDKNNDHWFIAS 112
Query: 228 FDFATEKFSIMPFPEGYEKSCSH-LRVLEGRLCLCTLGRHRTLDIYVGDKHEDGLTWSKL 286
D ATE + ++P P+ ++ +RVL G+ C+ +D++V ++ +WSKL
Sbjct: 113 LDLATESYEVVPQPDCANETLKPIIRVLGGQFCI-IFEYDDIIDVWVMQEYGVKESWSKL 171
Query: 287 IKIPDYQTHTDHIRNLRPLCYSREGDKILLIEERDDFVWYDLNKKTTES 335
+ +P + D +PL Y +EG +LI+ + Y+ N+ + S
Sbjct: 172 VTVPFFSDPLD-ANYAKPLFYLKEG--AILIDFYGMLILYNFNRNESTS 217
>GSVIVT01031694001 assembled CDS
Length = 184
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 30/189 (15%)
Query: 3 LPPEIIVDIFLKLPVKPLLRFRCLSKSMCSTIDDSDFIKAHLNRSIETNTHKKLILFGHT 62
LP II +I L+LPVK L+RFRC+ K+ + I F+++H R +T +L + ++
Sbjct: 4 LPLHIIENILLRLPVKSLIRFRCVCKAWRTLISHPHFVRSHF-RLPQTQARTRLCIIDYS 62
Query: 63 KTSTVISGIYAVD------LSDGLKESVKLDNSLNHGRFS----VIDCCSGLFLLLEPRI 112
+ S + SD S+ D + G+F ++D C GL + + +
Sbjct: 63 ERGDNHSMVVRASTKDCEAFSDNDGGSLAFDYLFDIGKFKHEVVLLDSCDGLLCIAD--L 120
Query: 113 INSLNTVKLVLWNPFTKRYKRLTDPPVESSSMFKPLQQYSYRYFDSFGLGYDAARNDHKV 172
N K+VLWNP T+++ +L P + G GYD++ +D+K+
Sbjct: 121 AN-----KIVLWNPSTRQFNQL------------PPNPNVVDFVGCHGFGYDSSADDYKI 163
Query: 173 VRILYEKPK 181
+ P
Sbjct: 164 FVVSMLDPN 172
>GSVIVT01008137001 assembled CDS
Length = 552
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 32/251 (12%)
Query: 3 LPPEIIVDIFLKLPVKPLLRFRCLSKSMCSTIDDSDFIKAHLNRSIETNTHKKLIL---F 59
L PE+I +I +LP++ +LR R + K+ S I FI +S N ++IL F
Sbjct: 154 LLPELISEILSRLPIELILRCRSVCKTWNSVIQSPLFINLQARKS--HNQPSRVILKPIF 211
Query: 60 GHTKTSTVISGIYAVDLSDGLKESVKLDNSLNHGRFSVIDCCSGLFLLLEPRIINSLNTV 119
G T+T + ++ +D + + D S ++ C+GL I +
Sbjct: 212 GGV-TATTMHSLFLLDTEERKSRRIH-DKSWRFSGLQIMSSCNGLLC-----ITSDSELG 264
Query: 120 KLVLWNPFTKRYKRLTDPPVESSSMFKPLQQYSYRYFDSFGLGYDAARNDHKVVRILYEK 179
+ + NP T+ + L P + F L+ GLG+D++ + VVR +K
Sbjct: 265 PVYISNPITREFVILPSP----ETGFSLLRH-------QVGLGFDSSNGKYIVVRAYTDK 313
Query: 180 PK----EVWIYSLRSDSWRKVEDWCQIALGVM--GMFVNGVMYF---EGENLENIVSFDF 230
K + L +SWR + IA + +F NG +++ + E ++SFD
Sbjct: 314 SKSQVNKFEAIMLGENSWRSLTVPDIIAECTINGSVFWNGALHWKIKKKPGRECMLSFDV 373
Query: 231 ATEKFSIMPFP 241
++ KF++ FP
Sbjct: 374 SSGKFAVTRFP 384
>GSVIVT01031693001 assembled CDS
Length = 152
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 3 LPPEIIVDIFLKLPVKPLLRFRCLSKSMCSTIDDSDFIKAHLN-RSIETNTHKKLILFGH 61
LP II +I L+LPVK LL RC+ K+ C+ I F K HL + T +I F
Sbjct: 4 LPLHIIDNILLRLPVKSLLWLRCVCKARCTLISHPQFAKTHLQLPQTQAKTRLCIINFEE 63
Query: 62 TKTSTVISGIYAV----DLSDGLKESVKLDNSLNHGR----FSVIDCCSGLFLLLEPRII 113
K + + ++ + DG + D SL F +++ C GL L++
Sbjct: 64 EKDNPFMVVRLSIKDWESIGDGNGGLLGFDYSLCDVNLLYPFHLLNSCDGLLCLVD---- 119
Query: 114 NSLNTVKLVLWNPFTKR 130
K+VLWNP T++
Sbjct: 120 ---TLGKIVLWNPSTRQ 133