Jatropha Genome Database

JcCA0286981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286981.10 + phase: 0 /partial
         (176 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037287001 assembled CDS                                       285   8e-78
GSVIVT01003597001 assembled CDS                                       270   2e-73
GSVIVT01009151001 assembled CDS                                       216   6e-57
GSVIVT01009150001 assembled CDS                                        86   8e-18

>GSVIVT01037287001 assembled CDS
          Length = 886

 Score =  285 bits (729), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 135/175 (77%), Positives = 153/175 (87%)

Query: 1   IFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPSTAPQKGGEVNLTLGGIDLNNS 60
           +FKSGPLFISSKGIGW SWKKRWFILTRTSLVFF+SDP+  PQ+GGEVNLTLGGIDLNNS
Sbjct: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKSDPNALPQRGGEVNLTLGGIDLNNS 78

Query: 61  GSVVVKADKKLLTVLFPDGRDGRTFTLKAETSEDLYEWKTALENALAQAPSACLAMGQNG 120
           GSVVV+ DKKLLTVLFPDGRDGR FTLKAE+SEDLY WKTALE ALAQAPSA L MG NG
Sbjct: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAESSEDLYGWKTALEQALAQAPSAALVMGHNG 138

Query: 121 IFKNDQLEGANDSPEQSKDKVPLQALVIGRPVLLALEDVDGSPSFLEKALRYIEE 175
           IF+ND  +    S  Q +DK  +++LV+GRP+LLALED+DG PSFLEKALR++E+
Sbjct: 139 IFRNDTSDTMEGSFCQWRDKRTVKSLVVGRPILLALEDIDGGPSFLEKALRFLEK 193


>GSVIVT01003597001 assembled CDS
          Length = 489

 Score =  270 bits (691), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 151/176 (85%), Gaps = 5/176 (2%)

Query: 1   IFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPSTAPQKGGEVNLTLGGIDLNNS 60
           +FKSGPLFISSKGIGW SWK+RWFILTRTSLVFFR +PS  PQKGGEVNLTLGGIDLNNS
Sbjct: 34  VFKSGPLFISSKGIGWASWKRRWFILTRTSLVFFRRNPSIVPQKGGEVNLTLGGIDLNNS 93

Query: 61  GSVVVKADKKLLTVLFPDGRDGRTFTLKAETSEDLYEWKTALENALAQAPSACLAMGQNG 120
           GSVV+KADKKLLTVLFPDG DGR FTLKAET EDL EWK ALE+ALAQAP+  L MG N 
Sbjct: 94  GSVVMKADKKLLTVLFPDGGDGRAFTLKAETLEDLNEWKDALEDALAQAPNVALVMGHNS 153

Query: 121 IFKNDQLEGANDSPEQSKDKVPLQALVIGRPVLLALEDVDGSPSFLEKALRYIEEH 176
           IF+N+  +G +      + K P+++LV+GRP+LLALEDV+G+PSFLEKALR++E++
Sbjct: 154 IFRNEPTDGID-----VRSKHPVKSLVVGRPILLALEDVNGAPSFLEKALRFLEQY 204


>GSVIVT01009151001 assembled CDS
          Length = 900

 Score =  216 bits (549), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 106/138 (76%), Positives = 116/138 (84%), Gaps = 5/138 (3%)

Query: 39  STAPQKGGEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRTFTLKAETSEDLYEW 98
           S  PQKG EVNLTLGGIDLNNSGSV VKADKKLLTVLFPDGRDGR FTLKAET EDLYEW
Sbjct: 26  SAIPQKGSEVNLTLGGIDLNNSGSVDVKADKKLLTVLFPDGRDGRAFTLKAETLEDLYEW 85

Query: 99  KTALENALAQAPSACLAMGQNGIFKNDQLEGANDSPEQSKDKVPLQALVIGRPVLLALED 158
           K ALENAL+QAPSA L MGQNG+ KNDQ E  +      KDK+P ++ V+GRP+LLALED
Sbjct: 86  KAALENALSQAPSAALVMGQNGVLKNDQAEAVD-----VKDKLPAKSSVLGRPILLALED 140

Query: 159 VDGSPSFLEKALRYIEEH 176
            DG+PSFLEKALR+IEEH
Sbjct: 141 ADGTPSFLEKALRFIEEH 158


>GSVIVT01009150001 assembled CDS
          Length = 180

 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 43/49 (87%)

Query: 1   IFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPSTAPQKGGEVN 49
           +FKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDP T  +  G+ +
Sbjct: 73  VFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPVTKTRHFGKAS 121