Jatropha Genome Database

JcCA0286251.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286251.20 - phase: 0 
         (160 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015335001 assembled CDS                                       219   3e-58
GSVIVT01032909001 assembled CDS                                        69   1e-12
GSVIVT01003927001 assembled CDS                                        68   2e-12
GSVIVT01012225001 assembled CDS                                        67   3e-12
GSVIVT01008104001 assembled CDS                                        64   2e-11

>GSVIVT01015335001 assembled CDS
          Length = 208

 Score =  219 bits (559), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/164 (65%), Positives = 129/164 (78%), Gaps = 6/164 (3%)

Query: 1   MQVIPRSASEATLYDGRVLERVKGEGKQHITEEGSSSQTEEDVKGSSMTLRAKDST---- 56
           +Q IP ++ EA+ YDGR LE  KG+GKQH TEEGSS QTE+DVKG+++  R+KD T    
Sbjct: 47  VQAIPHNSPEASHYDGRALELTKGDGKQHPTEEGSSCQTEDDVKGNNVIFRSKDGTDQAI 106

Query: 57  AEGFSFDFSAIKPGIASDLKFGGCGSYPNLPWVSTTGSGPNGRTISGVTYRYSANQIRIV 116
            E FS++ SAI+PGIA+D+KFGG GS+PNLPWVSTTGS  NG+TISGVTYRYS +QIRIV
Sbjct: 107 TEVFSYESSAIRPGIAADMKFGGSGSHPNLPWVSTTGS--NGKTISGVTYRYSRDQIRIV 164

Query: 117 CACHGSHMSPEEFVRHXXXXXXXXXXGSGLASFPSTNPAASAQS 160
           CACHGSHMSPEEFV+H          G+GLA FPS+NPA SAQS
Sbjct: 165 CACHGSHMSPEEFVQHASEEHANPETGTGLAPFPSSNPATSAQS 208


>GSVIVT01032909001 assembled CDS
          Length = 697

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 85  NLPWVSTTGSGPNGRTISGVTYRYS-ANQIRIVCACHGSHMSPEEFVRH 132
           ++P VSTTG GPNG+ + G  YRY    ++RIVC CHG+ +SP EFV+H
Sbjct: 628 DMPCVSTTGDGPNGKKVDGFLYRYKKGEEVRIVCVCHGTFLSPAEFVKH 676


>GSVIVT01003927001 assembled CDS
          Length = 240

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 35/48 (72%)

Query: 85  NLPWVSTTGSGPNGRTISGVTYRYSANQIRIVCACHGSHMSPEEFVRH 132
            +P VSTTG+GPNG+TI+G  YRY+  +I IVC CHGS  SP  FV H
Sbjct: 172 QMPCVSTTGNGPNGKTITGFLYRYTKAEISIVCVCHGSSFSPAGFVEH 219


>GSVIVT01012225001 assembled CDS
          Length = 353

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 5/113 (4%)

Query: 24  GEGKQHITEEGSSSQTEEDVKGSSMTLRAKDSTAE--GFSFDFSAIKPGIASDLKFG-GC 80
           GE +     +    Q+ ++  GSS T +  + T    G   +  +  PG++ +   G G 
Sbjct: 219 GEARSLACNQSLQEQSIQEASGSSRT-KPNEGTGRTSGAEMENPSKNPGLSENRGRGSGM 277

Query: 81  GSYPNLPWVSTTGSGPNGRTISGVTYRY-SANQIRIVCACHGSHMSPEEFVRH 132
               ++P V T G GPNGR I G+ Y+Y    ++RI+C CHGS +SP EFV+H
Sbjct: 278 NFMGDMPCVFTRGDGPNGRRIEGILYKYGKGEEVRIMCVCHGSFLSPAEFVKH 330


>GSVIVT01008104001 assembled CDS
          Length = 990

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 32/48 (66%)

Query: 85  NLPWVSTTGSGPNGRTISGVTYRYSANQIRIVCACHGSHMSPEEFVRH 132
            +P V TTG+GPNG+ I G  Y++   QI +VC CHG   +P EFVRH
Sbjct: 923 QMPTVVTTGAGPNGKRIEGFLYKFGTGQISLVCICHGMFFTPAEFVRH 970