Jatropha Genome Database

JcCA0286161.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.40 - phase: 0 /partial
         (93 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000036001 assembled CDS                                       144   1e-35
GSVIVT01008433001 assembled CDS                                        96   2e-21
GSVIVT01038788001 assembled CDS                                        96   3e-21

>GSVIVT01000036001 assembled CDS
          Length = 433

 Score =  144 bits (362), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 83/93 (89%)

Query: 1   DFGILAIPTVPGPAPKLNTDPTTLEVFRAKAFSLLSIAGVSGFCQVSIPLGMHDDLPLSI 60
           D G+L +PTVPGP PKL TDPTTLE FRA+AFSLLSIAGVSGFCQVSIPLG++D+LP+++
Sbjct: 339 DSGVLVLPTVPGPPPKLQTDPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLYDNLPVAV 398

Query: 61  SLLAKNGSDGFLLNVVQILYDTLQEQVAVSLRN 93
           SLLAK+GSDGFLLN+VQ LY +++EQV V+ + 
Sbjct: 399 SLLAKHGSDGFLLNLVQTLYGSIKEQVEVAEKT 431


>GSVIVT01008433001 assembled CDS
          Length = 590

 Score = 96.3 bits (238), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/93 (46%), Positives = 64/93 (68%)

Query: 1   DFGILAIPTVPGPAPKLNTDPTTLEVFRAKAFSLLSIAGVSGFCQVSIPLGMHDDLPLSI 60
           D GIL IPTV  P PKL    +  E ++ +   LLSIA +SG CQV++PLG++D  P+S+
Sbjct: 369 DDGILVIPTVADPPPKLGGKESLSEEYQNRTLGLLSIASMSGCCQVTVPLGLYDKYPVSV 428

Query: 61  SLLAKNGSDGFLLNVVQILYDTLQEQVAVSLRN 93
           S +A++G D FLL+ VQ +Y +LQEQ  ++ ++
Sbjct: 429 SFMARHGGDRFLLDTVQTMYASLQEQADIAAKS 461


>GSVIVT01038788001 assembled CDS
          Length = 607

 Score = 95.9 bits (237), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 63/90 (70%)

Query: 1   DFGILAIPTVPGPAPKLNTDPTTLEVFRAKAFSLLSIAGVSGFCQVSIPLGMHDDLPLSI 60
           D GIL IPTV  P  KLN+       F  +AF+LLSIA +SG CQV++PLG H+D P+S+
Sbjct: 386 DDGILVIPTVADPPLKLNSKKAVFSEFHDRAFTLLSIASMSGCCQVTVPLGKHEDFPISV 445

Query: 61  SLLAKNGSDGFLLNVVQILYDTLQEQVAVS 90
           S +A +G+D FLL+ V  +Y +LQEQ +++
Sbjct: 446 SFIAFHGADKFLLDTVLDMYPSLQEQASIT 475