Jatropha Genome Database

JcCA0286161.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.30 - phase: 0 /partial
         (209 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000037001 assembled CDS                                       258   1e-69

>GSVIVT01000037001 assembled CDS
          Length = 388

 Score =  258 bits (659), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/210 (61%), Positives = 159/210 (75%), Gaps = 1/210 (0%)

Query: 1   MEVKARAPGKIILSGEHAVVHGSTAVASSINLYTYVTLSFPT-SENDGTLKLQLKDMALE 59
           MEV+ARAPGKIIL+GEHAVVHGS AVA+SINLYT+V+L F + S++D TLKL LKDMALE
Sbjct: 1   MEVRARAPGKIILAGEHAVVHGSAAVAASINLYTHVSLRFHSISDDDHTLKLHLKDMALE 60

Query: 60  FSWPIGKIKEALPNLGAPSASTPTSCSIESVKSISALVEEQNIPEAKIALASGIAAFLWL 119
           FSW I +IKE L  +G P +STPT+C+ E +K I+AL+ EQNIPEAK+ LASG++AFLWL
Sbjct: 61  FSWSIERIKEVLQEVGCPFSSTPTTCTPEFIKLIAALLIEQNIPEAKLGLASGVSAFLWL 120

Query: 120 YTSIQGFRPATVVVTSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDKMHQGWLIFGES 179
           YT IQGF+PATVV+TS+                            ++D  H GW +FGE+
Sbjct: 121 YTCIQGFKPATVVITSELPLGSGLGSSASFCVSLSAALLALSDSASLDFSHPGWSVFGEN 180

Query: 180 ELELLNKWAFEGEKLIHGKPSGIDNTVSTY 209
           ELEL+NKWAFEGEK+IHGKPSGIDN+VST+
Sbjct: 181 ELELVNKWAFEGEKIIHGKPSGIDNSVSTF 210