Jatropha Genome Database

JcCA0286161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.20 - phase: 0 /pseudo/partial
         (111 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000035001 assembled CDS                                        62   4e-11

>GSVIVT01000035001 assembled CDS
          Length = 299

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 60  GFNIEAYDDVYTQQLGWNNPGATGESADVEPSVAIPAVPYLYSFDDDSDETD 111
           G NIEAYD+VY QQLGW NP AT E  + E +     VPYLY FD DSD TD
Sbjct: 249 GLNIEAYDEVYLQQLGWTNPMATTEGVE-EQNGHTHVVPYLYLFDYDSDGTD 299