Jatropha Genome Database

JcCA0286161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.10 - phase: 0 
         (88 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000036001 assembled CDS                                       147   1e-36
GSVIVT01008433001 assembled CDS                                        90   2e-19
GSVIVT01038788001 assembled CDS                                        89   5e-19

>GSVIVT01000036001 assembled CDS
          Length = 433

 Score =  147 bits (370), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/87 (77%), Positives = 78/87 (89%)

Query: 1  MARNPDYGAFMEKFVLKPTNSSDELPLNGLTFAVKDIFXVDGYVTGFGNPDWARTHLAAT 60
          MA+  +YGAFME+F+L+P++SS ELPLNGLTFAVKDIF VDGYVTGFGNPDWARTH AA 
Sbjct: 1  MAKASNYGAFMERFILQPSSSSHELPLNGLTFAVKDIFDVDGYVTGFGNPDWARTHQAAM 60

Query: 61 STAPAVLAILREXATCIGKTVMDEMAY 87
           TAP+VLA+L+  ATC+GKTVMDEMAY
Sbjct: 61 LTAPSVLAVLKGGATCVGKTVMDEMAY 87


>GSVIVT01008433001 assembled CDS
          Length = 590

 Score = 89.7 bits (221), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 4/86 (4%)

Query: 6   DYGAFMEKFVLKPTNSSDELPL----NGLTFAVKDIFXVDGYVTGFGNPDWARTHLAATS 61
           D+GAF+++  L P               L+FAV D+F ++GYVTGFGNPDWARTH  A+ 
Sbjct: 33  DFGAFVQRLQLLPPPQPAPPKAPHPLTNLSFAVSDVFDIEGYVTGFGNPDWARTHDTASR 92

Query: 62  TAPAVLAILREXATCIGKTVMDEMAY 87
           T+P V A++   ATC GKTV+DEMAY
Sbjct: 93  TSPVVSALVEGGATCTGKTVVDEMAY 118


>GSVIVT01038788001 assembled CDS
          Length = 607

 Score = 88.6 bits (218), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 58/84 (69%), Gaps = 4/84 (4%)

Query: 8   GAFMEKFVL----KPTNSSDELPLNGLTFAVKDIFXVDGYVTGFGNPDWARTHLAATSTA 63
           GAF+E+F L    +P   +  L L+G  FAV DIF V GYVTGFG+  W RTH  AT TA
Sbjct: 52  GAFVERFELLPFPQPPPPASRLLLSGFKFAVTDIFDVKGYVTGFGSTSWKRTHEEATKTA 111

Query: 64  PAVLAILREXATCIGKTVMDEMAY 87
            AV A+L+  ATC+GKTV+DE+++
Sbjct: 112 VAVTALLKNGATCVGKTVLDELSF 135