Jatropha Genome Database

JcCA0285981.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285981.30 + phase: 0 /pseudo/partial
         (221 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003206001 assembled CDS                                       323   3e-89
GSVIVT01003202001 assembled CDS                                       151   3e-37

>GSVIVT01003206001 assembled CDS
          Length = 771

 Score =  323 bits (829), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 155/199 (77%), Positives = 168/199 (84%), Gaps = 1/199 (0%)

Query: 1   METDEEQPVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSKVLLHRFNWQRLWTISP 60
           METDE +  LPFQLQFDKPV +QIKIAEWNPEKDLLAMVTEDSK+LLHRFNWQRLWTISP
Sbjct: 1   METDEVEQGLPFQLQFDKPVPAQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISP 60

Query: 61  GKCITSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRSLKSHTVAVVCLNWEEDGQLKRI 120
           G+CITSLCWRPDGKAIAVGLEDGT+SLHDVENGKLLRS+KSHTVAVVCLNWEEDGQL   
Sbjct: 61  GRCITSLCWRPDGKAIAVGLEDGTVSLHDVENGKLLRSMKSHTVAVVCLNWEEDGQLIG- 119

Query: 121 DCCNFSTYEDXXXXXXXXXXXXXXXXGVVSGDAGFMDDNEDSYQELSNSSYQQFNILCSA 180
           D  N   YED                G+VSGD GFMDD+EDS+ ELSNSS+Q+FNILCS 
Sbjct: 120 DSGNILAYEDRTSRFFPPAPRVPRMPGLVSGDTGFMDDSEDSFGELSNSSHQRFNILCSG 179

Query: 181 DRDGSICFSIFGIFPIGKI 199
           D+DGSICFSIFG+FPIGKI
Sbjct: 180 DKDGSICFSIFGMFPIGKI 198


>GSVIVT01003202001 assembled CDS
          Length = 592

 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 87/139 (62%), Gaps = 24/139 (17%)

Query: 61  GKCITSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRSLKSHTVAVVCLNWEEDGQLKRI 120
           G+CITSLCWRPDGKAIAVGLEDGT+SLHDVE   L                         
Sbjct: 11  GRCITSLCWRPDGKAIAVGLEDGTVSLHDVEVSYL------------------------G 46

Query: 121 DCCNFSTYEDXXXXXXXXXXXXXXXXGVVSGDAGFMDDNEDSYQELSNSSYQQFNILCSA 180
           D  N   YED                G+VSGD GFMDD+EDS+ ELSNSS+Q+FNILCS 
Sbjct: 47  DSGNILAYEDRTSRFFPPAPRVPRMPGLVSGDTGFMDDSEDSFGELSNSSHQRFNILCSG 106

Query: 181 DRDGSICFSIFGIFPIGKI 199
           D+DGSICFSIFGIFPIGKI
Sbjct: 107 DKDGSICFSIFGIFPIGKI 125